| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,767,908 – 23,768,032 |
| Length | 124 |
| Max. P | 0.615457 |
| Location | 23,767,908 – 23,768,032 |
|---|---|
| Length | 124 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 67.74 |
| Shannon entropy | 0.61686 |
| G+C content | 0.36380 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -9.71 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23767908 124 + 27905053 UCUCUCUUUUGCUAACUCUCAC-AAAGGGUGGAUCGAUGCAAUUGAAUUGUCGUAUGUCUUAACGUUUAGUGAAAAUCAAGU-AAAAAUUGAUAAUAAAGUCUAUAAUUAACACAAAUCGAUCCAC .....((((((..........)-)))))((((((((((.......(((((((((........)))..........(((((..-.....)))))..........)))))).......)))))))))) ( -22.84, z-score = -1.41, R) >droSim1.chr3R 23474259 122 + 27517382 UCUCUCAUUUGCUAACCCUCGC-AAUGGGUGGAUCGAUGCAACUGAAUUGUCCUAUGUCUUAACGUUUAG--AAAAUCAAGU-AUAAAUUGAGAAUAAAGUCUAUAAUUAACACCAAUCGAUCCAC ...((((((.((........))-))))))(((((((((.......((((((.((...(((((..(((((.--..........-.))))))))))....))...)))))).......))))))))). ( -24.14, z-score = -1.55, R) >droSec1.super_22 393202 120 + 1066717 UCUCUCAUUUGCUAACCCUCGC-AAAGGGUGGAUCGAUGCAAUUGAAUUGUCCUAUGUCUUAACGUUUAG--AAAAGCAAGU-AUAAAUUGAGAAUAAAGUCUA--AUUAACACAAAUCGAUCCAC ...(((.(((((........))-))))))(((((((((.......(((((..((...(((((..(((((.--..........-.))))))))))....))..))--))).......))))))))). ( -25.34, z-score = -1.88, R) >droYak2.chr3R 6102378 124 - 28832112 UCUCUCUUUUGCUAACCCACACAAAAGGGUGGAUCGAUGUUUUAAGAUUGUCCUAUAUCUUUACGUUUUG--AUCAGCAAGUUAUAAUUGGCGAAUAAAAUUUGUAAACAGCACAAAUCGAUCCAC ...((((((((..........))))))))(((((((((((...(((((........))))).))((.(((--....(((((((...............)))))))...))).))..))))))))). ( -25.76, z-score = -1.44, R) >droEre2.scaffold_4820 6195379 123 - 10470090 UCUCUCUUUUGCUAACCCACACCAAGGGGUGGAUCGAUGUUAUCAGCUUGUCCCACAUCUUAACGUUUCG--AUCAGCAAGU-AUAAGUGGCGAAUAAAAUGUAUAAUCAGCACAAAUCGAUCCAC ...............(((.......)))(((((((((((((((((..(((((((((........(((...--...)))....-....)))).).))))..)).)))))........)))))))))) ( -25.49, z-score = -0.68, R) >droGri2.scaffold_14906 8097508 121 - 14172833 -GUUGUUCUUUCAAAUACAUACAAGACUUUAUCUUCUUUCCACAUGCUUUCCGCUUGCAUU-ACAUGCAAAUCCUAUAAAUCCAUAAGCUCGCACUUCCAUAACUAGUUCUU-UAAAGCGCUAG-- -.......................((.(((((.............((.....))((((((.-..)))))).............))))).))............(((((.((.-...)).)))))-- ( -10.20, z-score = 0.33, R) >consensus UCUCUCUUUUGCUAACCCACAC_AAAGGGUGGAUCGAUGCAAUUGAAUUGUCCUAUGUCUUAACGUUUAG__AAAAGCAAGU_AUAAAUUGAGAAUAAAAUCUAUAAUUAACACAAAUCGAUCCAC ..............((((........))))((((((((..............................................................................)))))))).. ( -9.71 = -9.63 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:31 2011