| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,849,393 – 8,849,495 |
| Length | 102 |
| Max. P | 0.638503 |
| Location | 8,849,393 – 8,849,495 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 73.98 |
| Shannon entropy | 0.50267 |
| G+C content | 0.55360 |
| Mean single sequence MFE | -37.14 |
| Consensus MFE | -19.27 |
| Energy contribution | -20.40 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638503 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 8849393 102 + 23011544 ACAGCAUGCGGCUAGUGAAUGCCGAGGAUGUUGCAGUUGCACUGUAAGUUGCAGGUGUUUCGGCGUGGAAUC----UCCCAUGCGGUUGAGCAGCGUCAUGUUGUC (((((((.((((........))))..((((((((.(..(((((((.....))).))))..).((((((....----..))))))......))))))))))))))). ( -41.30, z-score = -2.35, R) >droSim1.chr2L 8628408 101 + 22036055 ACAGCAUGAGGCUGGUGAAUGCCGAGGAUGU-GCAGUUGCACUGGAAGUUGCAGGUGUUUCGGCGCGGAAUC----UCCCAUGCGGUUGAGCAGCGUCAUGUUGUC (((((((((.((((.(.((((((((((((.(-(((..(........)..)))).)).)))))))((((....----..))..)).))).).)))).))))))))). ( -42.10, z-score = -2.31, R) >droSec1.super_3 4323449 102 + 7220098 ACAGCAUGAGGCUGGUGAAUGCCGAGGAUGUUGCAGUUGCACUGGAAGUUGCAGGUGUUUCGCCGCGGAAUC----UCCCAUGCGGUCGAGCAGCGUCAUGUUGUC (((((((((.(((((.((...(((.((.((..(((.(((((........))))).)))..)))).)))....----)))))(((......))))).))))))))). ( -40.70, z-score = -1.63, R) >droYak2.chr2L 11495981 102 + 22324452 ACAGCAUGCGGCUGCUGAGUGCCGAGGAUGUUGCAGUUGCACUGCUAGUUGCAGGUGUUUCGGUGCGGAAUC----UCCCAUGCGUUUGAGCAGCGUCAUGUUGUC ((((((((..((((((.((..((((((....(((....)))((((.....))))...))))))..)((....----..)).......).))))))..)))))))). ( -41.20, z-score = -1.31, R) >droEre2.scaffold_4929 9441158 102 + 26641161 ACAGCAUGCGGCUGGUGAGUGCCGAGGAUGUUGCAGUUGCACUGCAAGUUGCAGGUGUUUCGGCGCGGAAUC----UCCCAUGCGGUCGAGCAGCGUCAUGUUGUC ((((((((..((((.((((((((((((...((((((((((...)))).))))))...)))))))))((....----..))......)))..))))..)))))))). ( -41.10, z-score = -0.91, R) >dp4.chr4_group5 1648626 84 - 2436548 ACAGCAUGGGG--GUUUGUUGC----------ACCGUUGCACUGC--GUUGCAGGUGU----GAGUGUGUCU----UUCCGAGAGUUUCAGCAGCGUCAUGUUGUC (((((((((((--((.....))----------.))(((((.((((--...))))...(----(((..(.((.----....)).)..))))))))).))))))))). ( -25.70, z-score = -0.08, R) >droPer1.super_5 1620001 84 - 6813705 ACAGCAUGUGG--GUUUGUUGC----------ACCGUUGCACUGC--GUUGCAGGUGU----GAGUGUGUCU----UUCCGAGAGUUUCAGCAGCGUCAUGUUGUC ((((((((.((--((.....))----------.))(((((.((((--...))))...(----(((..(.((.----....)).)..)))))))))..)))))))). ( -24.40, z-score = 0.23, R) >droVir3.scaffold_12723 4857424 100 + 5802038 GCUGCAUGGGGUGGCAUGCCGCAG------UUGCAGUUGCAGUUGAUGAUGCAGGUGUGUGUGCGUGCGGCAGGAAUUUCAAGAGUUAAAGCCGCGUCAUGUUGUC ((.((((((.(((((.((((((((------(.(((.(((((........))))).)))....)).)))))))..(((((...)))))...))))).)))))).)). ( -40.60, z-score = -2.14, R) >consensus ACAGCAUGCGGCUGGUGAAUGCCGAGGAUGUUGCAGUUGCACUGCAAGUUGCAGGUGUUUCGGCGCGGAAUC____UCCCAUGCGGUUGAGCAGCGUCAUGUUGUC ((((((((..((((.....(((((((......(((.(((((........))))).))))))))))..............(....)......))))..)))))))). (-19.27 = -20.40 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:05 2011