| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,749,210 – 23,749,330 |
| Length | 120 |
| Max. P | 0.525256 |
| Location | 23,749,210 – 23,749,330 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Shannon entropy | 0.39118 |
| G+C content | 0.63389 |
| Mean single sequence MFE | -46.01 |
| Consensus MFE | -25.26 |
| Energy contribution | -26.13 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23749210 120 + 27905053 GGACGCAUGUUCGCCCCCACCAAGACGUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGCUACGCCCUGGUGUCGGCCAUCGCCGCCUCAGGAGUGCCAGCUCUGGUCCAG (((((((((...(((..(((((.(.(((..((.((((((((((....))))........)))))).))..))).).)))))..)))))).)).......(((((....))))).)))).. ( -51.40, z-score = -2.67, R) >droSim1.chr3R 23459211 120 + 27517382 GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGGUACGCCCUGGUGUCGGCCAUCGCCGCCUCCGGAGUGCCCGCUCUGGUCCAG (((((((((...(((..(((((.(.(...(((.((((((((((....))))........)))))).)))...).).)))))..)))))).))......((((((....)))))))))).. ( -52.70, z-score = -2.88, R) >droSec1.super_22 374634 120 + 1066717 GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGGUACGCCCUGGUGUCGGCUAUCGCCGCCUCCGGAGUGCCCGCUCUGGUCCAG ((((((.((...(((..(((((.(.(...(((.((((((((((....))))........)))))).)))...).).)))))..)))...))..))...((((((....)))))))))).. ( -52.00, z-score = -2.80, R) >droYak2.chr3R 6083567 120 - 28832112 GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGCUACGCCCUGGUGUCGGCCAUUGCCGCCUCCGGAGUGCCCGCUCUGGUCCAG (((((((.....(((..(((((.(.(.(..((.((((((((((....))))........)))))).))..).).).)))))..)))...)))......((((((....)))))))))).. ( -49.10, z-score = -2.27, R) >droEre2.scaffold_4820 6176744 120 - 10470090 GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGCUACGCCCUGGUGUCGGCCAUCGCCGCCUCCGGAGUGCCCGCUCUGGUCCAG (((((((((...(((..(((((.(.(.(..((.((((((((((....))))........)))))).))..).).).)))))..)))))).))......((((((....)))))))))).. ( -48.60, z-score = -2.09, R) >droAna3.scaffold_13340 21885305 120 + 23697760 GGACGCAUGUUCGCUCCCACCAAGACCUACCGUCGCUGGCACCGCAAGGUGAACGUGAACCAGCGCCGUUACGCUUUGGUGUCGGCCAUCGCCGCCUCCGGUGUGCCCGCUUUGGUUCAG (((.((......)))))..(((.(((.....)))..)))((((....))))....((((((((.((.(.((((((..((.(.((((....)))).).)))))))).).)).)))))))). ( -46.00, z-score = -1.05, R) >dp4.chr2 22454819 120 - 30794189 GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGCCGUUACGCUCUGGUGUCGGCCAUCGCCGCCUCCGGCGUGCCCGCCCUCGUGCAG ....(((((...((...(((((.(((.(..((.((((((((((....))))........)))))).))..).).)))))))..(((...(((((....))))).))).))...))))).. ( -47.70, z-score = -1.80, R) >droPer1.super_0 9648523 120 - 11822988 GGACGUAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGCCGUUACGCUCUGGUGUCGGCCAUCGCCGCCUCCGGCGUGCCCGCCCUCGUGCAG ....(((((...((...(((((.(((.(..((.((((((((((....))))........)))))).))..).).)))))))..(((...(((((....))))).))).))...))))).. ( -45.70, z-score = -1.48, R) >droWil1.scaffold_181130 1625208 120 - 16660200 GGACGCAUGUUCGCCCCCACCAAGACUUACCGCCGCUGGCACCGUAAGGUGAAUGUAAACCAGCGUCGCUACGCUCUGGUUUCGGCUAUCGCCGCUUCAGGCGUGCCCGCCCUUGUCCAA ((((((......)).................((((((((((((....))))........))))))..((.((((.((((...((((....))))..))))))))))..))....)))).. ( -42.60, z-score = -1.42, R) >droVir3.scaffold_12855 6747110 120 - 10161210 GGUCGCAUGUUCGCUCCAACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUAAACCAGCGCCGUUAUGCUCUGGUUUCGGCUAUCGCCGCCUCCGGUGUGCCCGCGUUGGUGCAG ............((.(((((...(((.....)))((.(((((.((.((((....(.(((((((.((......)).))))))))(((....)))))))...))))))).))))))).)).. ( -45.20, z-score = -1.39, R) >droMoj3.scaffold_6540 9778464 120 + 34148556 GGUCGCAUGUUCGCACCAACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUAAACCAGCGCCGUUAUGCUUUGGUGUCCGCUAUCGCCGCCUCCGGUGUACCCGCAUUGGUGCAG ............(((((((((((..(.(..((.((((((((((....))))........)))))).))..).)..)))))....((...(((((....))))).....))..)))))).. ( -43.80, z-score = -1.63, R) >droGri2.scaffold_14906 8079639 120 - 14172833 GGUCGUAUGUUCGCACCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUUAACCAGCGUCGCUACGCUCUCGUCUCGGCUAUCGCCGCCUCCGGUGUGCCAGCGUUGGUCCAG (((.(..((....))..))))..((((...((.((((((((((....))))........)))))).))..(((((........(((...(((((....))))).)))))))).))))... ( -43.50, z-score = -1.87, R) >anoGam1.chr2R 19055059 120 + 62725911 GGACGCAUGUUCGCCCCGACCAAGCCGUGGCGCCGUUGGCACCGCAAGAUCAACAUCAACCUGAAGCGCUACGCUCUGGUUUCGGCCCUCGCUGCCAGCGGUGUCCCUGCCCUGGUGCAG ((((((......(((..((((((((.(((((((.(((((...(....).))))).((.....)).)))))))))).)))))..)))...(((.....)))))))))((((......)))) ( -47.00, z-score = -0.98, R) >apiMel3.Group15 4716914 120 - 7856270 GGACGUAUGUUUGCCCCAACAAAACCUUGGAGACGUUGGCAUCGUCGAAUUAAUGUUAAUCAGAAAAGAUAUGCCAUGGUUUCUGCUAUUGCUGCAUCUGGUGUUCCAGCUCUUGUACAA ....((((...(((..............((((((..((((((.(((.......((.....)).....)))))))))..))))))((....)).))).((((....)))).....)))).. ( -25.70, z-score = 0.80, R) >triCas2.ChLG5 2832387 120 - 18847211 GGGCGCAUGUUCGCACCGACCAAACCAUGGCGUCGCUGGCACAGACGCGUCAAUGUUAACCAACGUCGGUAUGCUCUGGCUUCGGCUGUGGCCGCCAGUGGGGUCCCAGCUUUGGUCAUG (((((......))).))(((((((.(..(((.((((((((.((((.(((((.(((((....)))))..).)))))))).....(((....))))))))))).)))...).)))))))... ( -49.10, z-score = -1.00, R) >consensus GGACGCAUGUUCGCCCCCACCAAGACCUUCCGUCGCUGGCACCGCAAGGUGAAUGUCAACCAGCGUCGCUACGCUCUGGUGUCGGCCAUCGCCGCCUCCGGUGUGCCCGCUCUGGUCCAG ((..((......)).)).((((........((.((((((.(((....))).........)))))).))...(((.((((...((((....))))...)))).))).......)))).... (-25.26 = -26.13 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:28 2011