| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,659,058 – 23,659,151 |
| Length | 93 |
| Max. P | 0.769186 |
| Location | 23,659,058 – 23,659,151 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.67 |
| Shannon entropy | 0.29367 |
| G+C content | 0.36859 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -14.99 |
| Energy contribution | -14.80 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23659058 93 + 27905053 --------------AGACA-AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA --------------.....-....(((((((((....(((((((((.....)))))))))..((((((((.--.(((.....)))...)------)))))))..)))))))..)). ( -24.90, z-score = -1.88, R) >droSim1.chr3R 23380342 93 + 27517382 --------------AGACA-AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA --------------.....-....(((((((((....(((((((((.....)))))))))..((((((((.--.(((.....)))...)------)))))))..)))))))..)). ( -24.90, z-score = -1.88, R) >droSec1.super_22 296777 93 + 1066717 --------------AGACA-AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCAG------UGAGAUUAAUUCGCCGGCCGA --------------.....-....(((((((((....(((((((((.....)))))))))..(((((((((--.(((.....)))..))------)))))))..)))))))..)). ( -26.10, z-score = -2.47, R) >droYak2.chr3R 6002894 93 - 28832112 --------------AGACA-AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA --------------.....-....(((((((((....(((((((((.....)))))))))..((((((((.--.(((.....)))...)------)))))))..)))))))..)). ( -24.90, z-score = -1.88, R) >droEre2.scaffold_4820 6088460 93 - 10470090 --------------AGACA-AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA --------------.....-....(((((((((....(((((((((.....)))))))))..((((((((.--.(((.....)))...)------)))))))..)))))))..)). ( -24.90, z-score = -1.88, R) >droAna3.scaffold_13340 4664820 94 - 23697760 --------------AGACACAAAACGAAGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA --------------..........((((((((((...(((((((((.....)))))))))....)))))))--)))......((..(((------.(.((.....)).))))..)) ( -24.70, z-score = -2.28, R) >dp4.chr2 4017576 95 + 30794189 ------------CCACACA-AAAACGAAGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA ------------.......-....((((((((((...(((((((((.....)))))))))....)))))))--)))......((..(((------.(.((.....)).))))..)) ( -24.70, z-score = -2.74, R) >droPer1.super_7 4110199 95 - 4445127 ------------CCACACA-AAAACGAAGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU--UUGAAAUAUUCAUCCG------UGAGAUUAAUUCGCCGGCCGA ------------.......-....((((((((((...(((((((((.....)))))))))....)))))))--)))......((..(((------.(.((.....)).))))..)) ( -24.70, z-score = -2.74, R) >droWil1.scaffold_181089 3915432 109 + 12369635 AGGAAACAAAAAAAUAAAA-AAAACGGAGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUUAAGUUUCGUU--UUGAAAUAUUCAUCUG----AGUGGGAUUAAUUCAACAGUCGG .(....)............-....((((((((((..((((((((((.....))))))))))...)))))))--)))..........(((----(.((.((.....))..)).)))) ( -25.80, z-score = -3.67, R) >droMoj3.scaffold_6540 1958667 92 - 34148556 --------------AAACA-AAAACGUUGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUUAAGUUUCGCCCUUUGAAAUAUUUAUCUGCUCGACUGACAUUAAUUC--------- --------------.....-.....((((.(.(((.((((((((((.....))))))))))..((((((.....)))))).....))).).))))............--------- ( -16.20, z-score = -1.12, R) >droVir3.scaffold_12855 8254495 93 - 10161210 --------------AAACA-AAAACGUUGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUUAAGUUUCGCU-UUUGAAAUAUUUAUCUGCCCGAGUGAGAUUAAUUCAA------- --------------...((-(((.....((((((..((((((((((.....))))))))))...)))))))-))))................((((.......))))..------- ( -18.70, z-score = -1.39, R) >droGri2.scaffold_14830 5979876 93 - 6267026 --------------AAACA-AAAACGUUGCAAAGAAAAGCAAUUAGCGAAAUUAAUUGCUGAAGUUUCGCU-UUUGAAAUAUUUAUCUGCCCGAAUGAGAUUAAUUCAA------- --------------...((-(((..(((((........)))))..((((((((.........)))))))))-))))................((((.......))))..------- ( -15.20, z-score = -0.41, R) >consensus ______________AGACA_AAAACGUGGCGAAGAAAAGCAAUUAGCGAAAUUAAUUGCUCAAGUUUCGCU__UUGAAAUAUUCAUCCG______UGAGAUUAAUUCGCCGGCCGA ............................((((((...(((((((((.....)))))))))....))))))....((((.((.((.((.........)))).)).))))........ (-14.99 = -14.80 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:20 2011