Locus 11771

Sequence ID dm3.chr3R
Location 23,653,671 – 23,653,761
Length 90
Max. P 0.850942
window16177

overview

Window 7

Location 23,653,671 – 23,653,761
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 99.12
Shannon entropy 0.01587
G+C content 0.45675
Mean single sequence MFE -26.00
Consensus MFE -26.00
Energy contribution -26.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.91
SVM RNA-class probability 0.850942
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23653671 90 - 27905053
-GCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
-..(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... ( -26.00, z-score =  -1.34, R)
>droSim1.chr3R 23374900 90 - 27517382
-GCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
-..(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... ( -26.00, z-score =  -1.34, R)
>droSec1.super_22 291330 90 - 1066717
-GCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
-..(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... ( -26.00, z-score =  -1.34, R)
>droYak2.chr3R 5997206 90 + 28832112
-GCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
-..(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... ( -26.00, z-score =  -1.34, R)
>droEre2.scaffold_4820 6083150 91 + 10470090
GCCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
...(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... ( -26.00, z-score =  -1.39, R)
>consensus
_GCGCUGUGAAAAGCGGAUUGUAUGUACAAGCUAAUUUAAGUUCGACGCCAGCUGUGCGUUUUGCUUGGGCUUCCACAUUCACAUCCUUAU
...(((......)))((((((.((((..(((((....(((((..((((((....).)))))..))))))))))..)))).)).)))).... (-26.00 = -26.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:19 2011