| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,844,511 – 8,844,567 |
| Length | 56 |
| Max. P | 0.500000 |
| Location | 8,844,511 – 8,844,567 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 68.36 |
| Shannon entropy | 0.56772 |
| G+C content | 0.43948 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -5.87 |
| Energy contribution | -7.65 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 8844511 56 - 23011544 -----AUUGCUUGUAAAGGGCAAUGAAUCGGAA----GGUUUUAGGGGCUGUCCUGAAACCUUCA -----(((((((.....)))))))......(((----((((((((((....))))))))))))). ( -23.80, z-score = -4.38, R) >droSim1.chr2L 8623454 56 - 22036055 -----AUUGCUUGUAAAGGGCAAUGAAUCGGAA----GGUUUUAGGGGCUGCCCCGAAACCUUCA -----(((((((.....)))))))......(((----(((((..(((....)))..)))))))). ( -23.20, z-score = -3.07, R) >droSec1.super_3 4318541 56 - 7220098 -----AUUGCUUGUAAAGGGCAAUGAAUCGGAA----GAUUUUAGGGGCUGCCCUGAAACCUUCA -----(((((((.....)))))))......(((----(.((((((((....)))))))).)))). ( -20.10, z-score = -2.69, R) >droYak2.chr2L 11490907 56 - 22324452 -----GUUGCUUGUAAAGGCCAGUCAAUCGGAA----AGUUUUAGGGACUGGUCUGAAACCUUAA -----...........(((((((((..(..((.----..))..)..))))))))).......... ( -13.30, z-score = -0.76, R) >droAna3.scaffold_12916 10509040 50 - 16180835 AUGCCAUUCCUU-UGGAGGGCAAUGAAUCGAAA----AGUUUUAGGGGCUGCCCG---------- .((((.((((..-.))))))))...........----.......(((....))).---------- ( -12.60, z-score = 0.09, R) >droWil1.scaffold_180772 8741335 60 + 8906247 -----ACUAUGUUUAAUGGGCAAUGAAUUGUAAACUGAAUGGUUGAGGAUGUGUGAAAAUUUCCA -----.((((.....))))((((....)))).((((....))))..(((...((....)).))). ( -7.00, z-score = 0.59, R) >consensus _____AUUGCUUGUAAAGGGCAAUGAAUCGGAA____AGUUUUAGGGGCUGCCCUGAAACCUUCA .....(((((((.....))))))).............((((((((((....)))))))))).... ( -5.87 = -7.65 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:04 2011