| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,636,338 – 23,636,437 |
| Length | 99 |
| Max. P | 0.505823 |
| Location | 23,636,338 – 23,636,437 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.15 |
| Shannon entropy | 0.40607 |
| G+C content | 0.49031 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23636338 99 - 27905053 UUUUUUCUUCAGCCG--UUCUUUUUCUGUUCGGCACAUUGCGCGAGGAAACUUUCUCCGUUGCACGUGCAACAUGUCAC--------AUAUUC-CAUCGCAC------UCCAGUGA ...........((((--..(.......)..)))).(((((.((((((((.........(((((....)))))(((...)--------)).)))-).))))..------..))))). ( -26.00, z-score = -2.71, R) >droEre2.scaffold_4820 6065752 105 + 10470090 UUCUUUCGCCAGCCG--AUCUCUUUCUGUGCAGCACACGGCGCGCGGAAACUUUCUCCGCUGCACGUGCUACAUGUCAC--------AUAUUC-CAUCGCACGGUGAGUGCAGUGA ...((((((..((((--(......)).(((.....))))))..))))))........((((((((((((.....).)))--------......-((((....)))).)))))))). ( -33.20, z-score = -0.82, R) >droYak2.chr3R 5979208 110 + 28832112 UUUUUGCUUUAGCUGAAUUCUUCUGCUGUGUGGCACAUAGCGCGAGAAAACUUUCUCCGCUGCACGUGCAACAUGUCACAAGCAUAUAUAUUCGCAUCGCAC------UCCAGUGA ...........((.((((.....((((.(((((((...((((.(((((....)))))))))((....))....))))))))))).....)))))).((((..------....)))) ( -31.80, z-score = -1.51, R) >droSec1.super_22 274154 76 - 1066717 -------------------------CUGUUCGGCACAUACCGCGAGGAAACUUUCUCCGUUGCACGUGCAACAUGUCAC--------AUAUUC-CAUCGCAC------UUCAGUGA -------------------------(((...((......))((((((((.........(((((....)))))(((...)--------)).)))-).))))..------..)))... ( -17.80, z-score = -0.74, R) >droSim1.chr3R_random 1130554 100 - 1307089 UUUUUCCUUCAGCCG-UUCCUUUUUCUGUUCGGCACAUAGCGCGAGGAAACUUUCUCCGCUGCACGUGCAACAUGUCAC--------AUAUUC-CAUCGCAC------UUCAGUGA ...........((((-..(........)..))))...(((((.(((((....))))))))))...((((.....).)))--------......-..((((..------....)))) ( -21.70, z-score = -1.18, R) >consensus UUUUUUCUUCAGCCG__UUCUUUUUCUGUUCGGCACAUAGCGCGAGGAAACUUUCUCCGCUGCACGUGCAACAUGUCAC________AUAUUC_CAUCGCAC______UCCAGUGA ..........................(((...((((.(((((.(((((....))))))))))...)))).))).......................((((............)))) (-15.28 = -15.32 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:15 2011