| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,634,521 – 23,634,619 |
| Length | 98 |
| Max. P | 0.783339 |
| Location | 23,634,521 – 23,634,619 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Shannon entropy | 0.37700 |
| G+C content | 0.43844 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -18.20 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23634521 98 - 27905053 UCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU-------CCUGCUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))............-------..)))))....... ( -24.90, z-score = -1.21, R) >droSim1.chr3R 23355437 98 - 27517382 UCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU-------CCUGCUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))............-------..)))))....... ( -24.90, z-score = -1.21, R) >droSec1.super_22 272335 98 - 1066717 UCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU-------CCUGCUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))............-------..)))))....... ( -24.90, z-score = -1.21, R) >droYak2.chr3R 5977290 98 + 28832112 UCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU-------CCUGCUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))............-------..)))))....... ( -24.90, z-score = -1.21, R) >droEre2.scaffold_4820 6063963 98 + 10470090 UCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU-------CCUGCUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))............-------..)))))....... ( -24.90, z-score = -1.21, R) >droAna3.scaffold_13340 4637788 105 + 23697760 UCUAUCAUAGUCC---GGGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCACCGACGCUCUCGGUCCAUUUGU .............---(((((...(((((((........)))))))..........(((((((.....)))))))...)))....(((((.....)))))))...... ( -28.00, z-score = -0.90, R) >dp4.chr2 3990338 103 - 30794189 UCUAUCAUAGCCA---AAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGUAUU--GCCUUGGUCCAUUUGU .........((((---(.(((...(((((((........)))))))..........(((((((.....)))))))..............)--)).)))))........ ( -27.00, z-score = -1.53, R) >droPer1.super_7 4083080 103 + 4445127 UCUAUCAUAGCCA---AAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGUAUU--GCCUUGGUCCAUUUGU .........((((---(.(((...(((((((........)))))))..........(((((((.....)))))))..............)--)).)))))........ ( -27.00, z-score = -1.53, R) >droWil1.scaffold_181089 3887009 108 - 12369635 UCUAUCAUAGCCAUAGGAGCAUUUGUCACGUGAAGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGUAUUCCUCUUUGGUCCAUUUGU .........((((.(((((.....(((((((........)))))))..........(((((((.....))))))).............)))))...))))........ ( -26.70, z-score = -1.53, R) >droVir3.scaffold_12855 8221577 78 + 10161210 ---------UCUAUCAUUACAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAAUCGU--------------------- ---------.............(((((.(....).)))))...((((.((......(((((((.....)))))))...)).))))..--------------------- ( -19.30, z-score = -1.53, R) >droMoj3.scaffold_6540 1919123 78 + 34148556 ---------UCUAUCAUUACAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUACGU--------------------- ---------......(((((..(((((.(....).))))).)))))..........(((((((.....)))))))............--------------------- ( -19.20, z-score = -1.51, R) >droGri2.scaffold_14830 5949719 83 + 6267026 ----ACACAUCUAUCAUUACAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUUGU--------------------- ----...........(((((..(((((.(....).))))).)))))..........(((((((.....)))))))............--------------------- ( -19.20, z-score = -1.22, R) >consensus UCUAUCAUAGCCA___GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCGU_______CCUGCUCCAUUUGU ........................(((((((........)))))))..........(((((((.....)))))))................................. (-18.20 = -18.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:14 2011