| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,626,734 – 23,626,847 |
| Length | 113 |
| Max. P | 0.839874 |
| Location | 23,626,734 – 23,626,847 |
|---|---|
| Length | 113 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.86 |
| Shannon entropy | 0.14123 |
| G+C content | 0.48026 |
| Mean single sequence MFE | -33.32 |
| Consensus MFE | -24.41 |
| Energy contribution | -24.95 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23626734 113 + 27905053 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droSec1.super_22 260232 113 + 1066717 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droSim1.chr3R 23347304 113 + 27517382 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droYak2.chr3R 5969018 113 - 28832112 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droEre2.scaffold_4820 6056339 113 - 10470090 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droAna3.scaffold_13340 4629763 113 - 23697760 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCUGGG --....(((......(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).))))))))))))))))).(((((...))))).))). ( -33.10, z-score = -1.72, R) >dp4.chr2 3981864 113 + 30794189 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droPer1.super_7 4074552 113 - 4445127 --CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG --(((.....)))..(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))((((((......)))))). ( -35.90, z-score = -3.03, R) >droVir3.scaffold_12855 8210848 113 - 10161210 --GAUGCCAACCGACAUGUUGUUUGCCAGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUAAGCCGACCCAA --...(((..(((((((((...((((......))))......)))))))))...)))(((((((.........((.....)).........)))))))((((...))))...... ( -27.27, z-score = -1.55, R) >droMoj3.scaffold_6540 1906885 109 - 34148556 ------CCGACCGACAUGUUGUUUGCCAGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUAAGCCCAAACAC ------.((.(((((((((...((((......))))......)))))))))...((.((.((((....)))).)).))............)).(((((.(((...)))).)))). ( -25.40, z-score = -1.55, R) >droGri2.scaffold_14830 5939540 115 - 6267026 AAGUCCAGGACCGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUUUUGCGGCUAAGCCGACCCAU ..(((..((.(((.((.(((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))..))))).....))))).... ( -29.40, z-score = -1.69, R) >consensus __CCGACCAACGGACAUGUUGUUUGUCUGAGCGCAAUUUAUUGCAUGUCGGAAAGGCCAAUAUUAUAAGAUGAUGACCCCCGAAGAUAAACGAUGUUGCGGCUUAGCCGCCGCAG ...............(((((((((((((....((((....))))...((((...((.((.((((....)))).)).)).)))))))))))))))))..((((...))))...... (-24.41 = -24.95 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:13 2011