| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,601,888 – 23,601,980 |
| Length | 92 |
| Max. P | 0.936814 |
| Location | 23,601,888 – 23,601,980 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 61.53 |
| Shannon entropy | 0.64108 |
| G+C content | 0.47344 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -9.29 |
| Energy contribution | -9.15 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23601888 92 + 27905053 -----------------------------ACGUUUUUCCCCUGUCUUUCCUGCUUCCCGCUUCC-CGCUUUUCCAGCUGCCCGAAUUCCGUAUGCAACGCAACAAUAGUUUUGCAUAUAAAU -----------------------------.((...................((.....))....-.(((.....)))....))......((((((((.((.......)).)))))))).... ( -11.40, z-score = -0.92, R) >droSim1.chr3R 23325344 86 + 27517382 -----------------------------CCGUUUUUCCCCUGUCUUU------UCCCGCUUCC-CGCUUUUCCAGCUGCCCGAAUUCCGUAUGCAACGCAACAAUAGUUUUGCAUAUAAAU -----------------------------..................(------((..((....-.(((.....))).))..)))....((((((((.((.......)).)))))))).... ( -11.20, z-score = -1.41, R) >droSec1.super_22 238921 86 + 1066717 -----------------------------CCGUUUUUCCCCUGUUUUU------UCCCGCUUCC-CGCUUUUCCAGCUGCCCGAAUUCCGUAUGCAACGCAACAAUAGUUUUGCAUAUAAAU -----------------------------..................(------((..((....-.(((.....))).))..)))....((((((((.((.......)).)))))))).... ( -11.20, z-score = -1.35, R) >droEre2.scaffold_4820 6032320 76 - 10470090 ----------------------------------------CCGUUUUU------CCCCGCUCGCACGCUUUUCCAGCUGCCCGAAUUCGGUAUGCAACGCAACAAUAGUUUUGCAUAUAAAU ----------------------------------------........------........(((.(((.....))))))(((....)))(((((((.((.......)).)))))))..... ( -15.60, z-score = -1.28, R) >dp4.chr2 3958139 118 + 30794189 CCCCAUCCGCCCUGCUCGCUCUCGCUCUGCUUCUCUUUCACUGCUUUUCA----UGUCUAUCGCUCUGUGGCAUUGCCGUAGUCAUUUUGUAUGCAGUGCAACAAUAGUUUUGCAUAUAAAU ........((...((........))...)).........(((((.....(----((((...........)))))....)))))...(((((((((((.((.......)).))))))))))). ( -21.00, z-score = -0.28, R) >droMoj3.scaffold_6540 1877284 101 - 34148556 ---------------GCGGAGUACCUGGUCGACUACCUGGCUGGUUGGC-----UG-CCGUGGCACCUUGCCACUGCGGCAUUCACUCAGUAUGCAAUGCAACAAUAGUUUUGCAUAUAAAU ---------------...((((..(..((((......))))..)...((-----((-(.(((((.....))))).)))))....)))).((((((((.((.......)).)))))))).... ( -37.90, z-score = -2.19, R) >consensus _____________________________CCGUUUUUCCCCUGUUUUU______UCCCGCUUCC_CGCUUUUCCAGCUGCCCGAAUUCCGUAUGCAACGCAACAAUAGUUUUGCAUAUAAAU .........................................................................................((((((((.((.......)).)))))))).... ( -9.29 = -9.15 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:10 2011