| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,601,566 – 23,601,673 |
| Length | 107 |
| Max. P | 0.982666 |
| Location | 23,601,566 – 23,601,673 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Shannon entropy | 0.48031 |
| G+C content | 0.47789 |
| Mean single sequence MFE | -35.76 |
| Consensus MFE | -16.27 |
| Energy contribution | -19.96 |
| Covariance contribution | 3.68 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982666 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 23601566 107 + 27905053 -UUAUUGUUCUUAUUGCUGGCUGUGGCUGU----UGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA -.............(((.((((((.((.((----((((...((((....))))((((...((((((......))))))....))))......).))))).)).))))))))) ( -39.10, z-score = -2.32, R) >droSim1.chr3R 23325014 103 + 27517382 -UUAUUGUUCUUAUUG----CUGUGGCUGU----UGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA -...............----..((((((((----(((....((((....))))((((...((((((......))))))....))))..............))))))))))). ( -38.20, z-score = -3.10, R) >droSec1.super_22 238603 103 + 1066717 -UUAUUGUUCUUAUUG----CUGUGGCUGU----UGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA -...............----..((((((((----(((....((((....))))((((...((((((......))))))....))))..............))))))))))). ( -38.20, z-score = -3.10, R) >droYak2.chr3R 5945885 110 - 28832112 -UUAUUGUUCUUAUUGCUG-UUGUGGCUGUCUGUUGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA -..............((((-(((((((........))))).(((...((((((.(((((..(((((......)))))))))).((....)).)))))).))))))))).... ( -36.40, z-score = -1.74, R) >droEre2.scaffold_4820 6031990 103 - 10470090 -UUAUUGUUCUUAUUG----CUGUGGCUGU----UGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA -...............----..((((((((----(((....((((....))))((((...((((((......))))))....))))..............))))))))))). ( -38.20, z-score = -3.10, R) >droAna3.scaffold_13340 4609606 86 - 23697760 GCUUUUGUUAUUGUUU----UUACGGCUG----------CUGCAUAUUUAUGCAUCUUUUUGCCACUGCAACAGC-CGCAAAAAUGGCGGCAAAGGCUGCA----------- ((((((((..(..(((----((.((((((----------.((((.......(((......)))...)))).))))-)).)))))..)..))))))))....----------- ( -34.80, z-score = -3.95, R) >dp4.chr2 3957837 83 + 30794189 -UUAUUGUUCGUACUG----CUGCUGCUG---------ACUGCAUAUUUAUGCGUUUGUUUGCC----AGGCAACGCUCUUGCGACACAGCAACAGCAAUG----------- -.............((----(((.(((((---------...((((....))))(((((.....)----))))..(((....)))...))))).)))))...----------- ( -25.40, z-score = -1.11, R) >consensus _UUAUUGUUCUUAUUG____CUGUGGCUGU____UGCCACUGCAUAUUUAUGCGUUUGUUUGCCCCAAGAACGGGGCACAGAAGACCCAUCAGCGUAACUGCAACAGCCGCA ......................((((((((...........((((....))))((((...((((((......))))))....)))).................)))))))). (-16.27 = -19.96 + 3.68)
| Location | 23,601,566 – 23,601,673 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.10 |
| Shannon entropy | 0.48031 |
| G+C content | 0.47789 |
| Mean single sequence MFE | -36.12 |
| Consensus MFE | -16.42 |
| Energy contribution | -19.99 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963536 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 23601566 107 - 27905053 UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCA----ACAGCCACAGCCAGCAAUAAGAACAAUAA- (((((((((.((.(((.((((((((.((......(((((((....))))))).....)).))).......)))))..)----)).)).)))))).))).............- ( -39.41, z-score = -2.19, R) >droSim1.chr3R 23325014 103 - 27517382 UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCA----ACAGCCACAG----CAAUAAGAACAAUAA- ((((..((((((((..((.(....).))...))))((((((....)))))).))))..))))......(((.(((((.----...))))).)----)).............- ( -38.00, z-score = -2.48, R) >droSec1.super_22 238603 103 - 1066717 UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCA----ACAGCCACAG----CAAUAAGAACAAUAA- ((((..((((((((..((.(....).))...))))((((((....)))))).))))..))))......(((.(((((.----...))))).)----)).............- ( -38.00, z-score = -2.48, R) >droYak2.chr3R 5945885 110 + 28832112 UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCAACAGACAGCCACAA-CAGCAAUAAGAACAAUAA- ....((((((((((.....)))...(((..(((((((((((....))))))........((((....)))).......)))))..))).)))-))))..............- ( -38.50, z-score = -2.29, R) >droEre2.scaffold_4820 6031990 103 + 10470090 UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCA----ACAGCCACAG----CAAUAAGAACAAUAA- ((((..((((((((..((.(....).))...))))((((((....)))))).))))..))))......(((.(((((.----...))))).)----)).............- ( -38.00, z-score = -2.48, R) >droAna3.scaffold_13340 4609606 86 + 23697760 -----------UGCAGCCUUUGCCGCCAUUUUUGCG-GCUGUUGCAGUGGCAAAAAGAUGCAUAAAUAUGCAG----------CAGCCGUAA----AAACAAUAACAAAAGC -----------....((.((((......((((((((-(((((((((...(((......))).......)))))----------)))))))))----)))......)))).)) ( -31.50, z-score = -3.24, R) >dp4.chr2 3957837 83 - 30794189 -----------CAUUGCUGUUGCUGUGUCGCAAGAGCGUUGCCU----GGCAAACAAACGCAUAAAUAUGCAGU---------CAGCAGCAG----CAGUACGAACAAUAA- -----------.(((((((((((((..((....))((((.....----.((........))......))))...---------)))))))))----))))...........- ( -29.40, z-score = -2.05, R) >consensus UGCGGCUGUUGCAGUUACGCUGAUGGGUCUUCUGUGCCCCGUUCUUGGGGCAAACAAACGCAUAAAUAUGCAGUGGCA____ACAGCCACAG____CAAUAAGAACAAUAA_ ...((((((....(((((.................((((((....))))))........((((....)))).))))).....))))))........................ (-16.42 = -19.99 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:09 2011