| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,588,211 – 23,588,319 |
| Length | 108 |
| Max. P | 0.728362 |
| Location | 23,588,211 – 23,588,319 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.37 |
| Shannon entropy | 0.24974 |
| G+C content | 0.54049 |
| Mean single sequence MFE | -36.70 |
| Consensus MFE | -28.01 |
| Energy contribution | -29.95 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23588211 108 - 27905053 ------AGGAGCAGUGGCAGGAGUCGGAGCACCAAAGCUGGUGAAACAACUCCAACUGCGGCGCCAGCUUUGCACACACGGCUGAAGCCAUAAUCCAUCAUAAGUUAAAAUGCC ------.((((((((....(((((.(...(((((....)))))...).))))).)))))(((..(((((.((....)).)))))..)))....))).................. ( -39.70, z-score = -2.79, R) >droEre2.scaffold_4820 6019183 88 + 10470090 ------------------------UGCAGCA--GGAGCUGCUGAAACAACUCCAACUGCGGCGGCAGCUUUGCACACACGGCUGAAGCCAUAAUCCAUCAUAAGUUAAAAUGCC ------------------------.((((..--((((.((......)).))))..))))(((..(((((.((....)).)))))..)))......................... ( -27.50, z-score = -1.53, R) >droSec1.super_22 225217 114 - 1066717 AGGAGCAGGAGCGGUGGCAGGAGCCGGAGCACCGAAGCUGGUGAAACAACUCCAACUGCGGCGCCAGCUUUGCACACACGGCUGAAGCCAUAAUCCAUCAUAAGUUAAAAUGCC .......(((...(((((...(((((......(((((((((((...((........))...)))))))))))......)))))...)))))..))).................. ( -39.80, z-score = -1.33, R) >droSim1.chr3R 23311561 114 - 27517382 AGGAGCAGGAGCGGUGGCAGGAGCCGGAGCACCGAAGCUGGUGAAACAACUCCAACUGCGGCGCCAGCUUUGCACACACGGCUGAAGCCAUAAUCCAUCAUAAGUUAAAAUGCC .......(((...(((((...(((((......(((((((((((...((........))...)))))))))))......)))))...)))))..))).................. ( -39.80, z-score = -1.33, R) >consensus ______AGGAGCGGUGGCAGGAGCCGGAGCACCGAAGCUGGUGAAACAACUCCAACUGCGGCGCCAGCUUUGCACACACGGCUGAAGCCAUAAUCCAUCAUAAGUUAAAAUGCC .......(((...(((((...(((((......(((((((((((...((........))...)))))))))))......)))))...)))))..))).................. (-28.01 = -29.95 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:05 2011