| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,838,832 – 8,838,900 |
| Length | 68 |
| Max. P | 0.882242 |
| Location | 8,838,832 – 8,838,900 |
|---|---|
| Length | 68 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 68.63 |
| Shannon entropy | 0.54575 |
| G+C content | 0.44003 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -10.34 |
| Energy contribution | -9.14 |
| Covariance contribution | -1.20 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8838832 68 - 23011544 AGAGCUUACGUGCUGCAAAUUAGCGCGAGCUCGAAAGCCAAGGGUGAGUUGAUUAGUUAAAACUAAAG---- .(((((..(((((((.....))))))))))))....(((...))).......(((((....)))))..---- ( -18.40, z-score = -1.23, R) >droSim1.chr2L 8617481 67 - 22036055 -AGGGUUACGUGCUGCAAAUUAGCGCGAGCUCGAAAGCCAAGGGCGAGUUGAUUAAUUAAAACUAAAG---- -.(((((.(((((((.....))))))))))))....(((...))).((((..........))))....---- ( -18.20, z-score = -1.41, R) >droSec1.super_3 4312924 68 - 7220098 AGGGGUUACGUGCUGCAAAUUAGCGCGAGCUCGAAAGCCAAGGGCGAGUUGAUUAAUUAAAACUAAAG---- ..(((((.(((((((.....))))))))))))....(((...))).((((..........))))....---- ( -18.00, z-score = -1.18, R) >droEre2.scaffold_4929 9430276 72 - 26641161 AGGGGUUACGUGCUGCGAAUUAGCGCGAGCUCGAACUCCAAAGACAGGUUGAUUAGUCAAAACGGCUAACAA .((((((.((.((((((......))).))).)))))))).........(((.((((((.....))))))))) ( -24.00, z-score = -2.51, R) >droAna3.scaffold_12916 10503378 65 - 16180835 -GGGGUUACAUGUACUCUACGUAUGUAUGUAUGUAUGCCA--GAUAGGAUUAUUCUUUAUCGCAAAAG---- -..((((((((((((.........))))..))))).))).--(((((((....)).))))).......---- ( -11.20, z-score = 0.19, R) >consensus AGGGGUUACGUGCUGCAAAUUAGCGCGAGCUCGAAAGCCAAGGGCGAGUUGAUUAAUUAAAACUAAAG____ ........(((((((.....)))))))((((((...........))))))...................... (-10.34 = -9.14 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:03 2011