| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,586,823 – 23,586,915 |
| Length | 92 |
| Max. P | 0.811829 |
| Location | 23,586,823 – 23,586,915 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 72.06 |
| Shannon entropy | 0.57200 |
| G+C content | 0.50370 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -13.33 |
| Energy contribution | -13.51 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23586823 92 + 27905053 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAAC---------GGUCGCAGGACCUCACGUUUU--CGGUGAGCUGGAGAUUGGUG--------- ...................((((((((((((((((.....)))))))))..---------)))))))..(((....(((((--(((....)))))))).))).--------- ( -27.30, z-score = -1.04, R) >droSim1.chr3R 23310189 92 + 27517382 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAAC---------GGUCGCAGGACCUCACGUUUC--CAGUGGGCUGCAGAUUGGUG--------- ...........(((.(((.((((((((((((((((.....)))))))))..---------((((....)))).(((.....--..))))))))))..))))))--------- ( -29.50, z-score = -1.48, R) >droSec1.super_22 223852 86 + 1066717 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGCUAAUUGCUCUGAUUAAUGAACC--------GGCCGUAGGACCUCACGU---------GGCCUGGAGAUUGGUG--------- .........((((((....))))))..((((((((..((........)).((--------(((((...(....)...)---------)))).)).))))))))--------- ( -21.80, z-score = 0.71, R) >droYak2.chr3R 5930412 93 - 28832112 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAAC---------GGUCGCAGGACCUCACGUUUUU-CAGUGGGUGGCAAGCGGGUG--------- ..........((((((...((((((((((((((((.....)))))))))..---------)))))))..(((.(((......-..)))))).))..))))...--------- ( -30.30, z-score = -1.67, R) >droEre2.scaffold_4820 6017906 92 - 10470090 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAAC---------GCUCGCAGGACCUCACGUUCU--CAGCGGCUCGCAGGUUGCUG--------- ..............((((.((((((((((((((((.....)))))))))..---------(((.(.(((((.....)))))--))))))).))))..))))..--------- ( -30.00, z-score = -1.27, R) >droAna3.scaffold_13340 4594774 98 - 23697760 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACA--------GGCG-CCCGACCUCACGUCCCAUCGGGGGUCCACGGACAUGGGUAUG----- .......(((((((((....)).((((((((((((.....)))))))))...--------))))-)..((((((.((......))))))))....))))).......----- ( -30.00, z-score = -0.17, R) >dp4.chr2 3942345 89 + 30794189 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACG--------GGCG-CCUGACCUCACGUCCUUGUGG--GUGGGUGGCUGU------------ .........((((((....)))))).(((((((((.....)))))))))(((--------(.((-(((.(((.((((....)))))--))))))).))))------------ ( -33.00, z-score = -2.37, R) >droPer1.super_7 4035097 89 - 4445127 AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACG--------GGCG-CCUGACCUCACGUCCUUGUGG--GUGGGUGGCUGU------------ .........((((((....)))))).(((((((((.....)))))))))(((--------(.((-(((.(((.((((....)))))--))))))).))))------------ ( -33.00, z-score = -2.37, R) >droWil1.scaffold_181089 3834082 112 + 12369635 AAAAAAAGUGUCGCACAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACCCAAGAGCCAGAAGCAUAACCUGAAUCAGAAACAACAAUUCCAGAACGAACGAGACAGAGA .......((((((((....))))))(((((...((((((((..............((..(((.........)))..)).(((.......))))))))))))))))))..... ( -21.90, z-score = -1.90, R) >droVir3.scaffold_12855 8162877 89 - 10161210 AACGGAAACGUCGCCCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACG--------AGCGACCUGACCUCACGUGCCUGCCGAGGCC-GAAGUG-------------- .(((....)))..........((((((((....((((((........)))))--------)((.((.((....)).))))....)))))))-).....-------------- ( -26.50, z-score = -1.67, R) >droMoj3.scaffold_6540 1856176 93 - 34148556 AACGGAAACGUCGCCCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAACG--------AGCGACCUGACCUCACGUGCCUGCCGCGGCUUGGAGUGGUG----------- .(((....)))(((((((.((((((.(((((((((.....)))))))))...--------.((.((.((....)).))))..))))))..)))).)))...----------- ( -32.00, z-score = -1.95, R) >droGri2.scaffold_14830 5892155 87 - 6267026 AACGGAAAUGUCGCCCAAAUGCGACCUCGUUAAUUGUUUUGAUUAAUGAACA--------AGCGACCUGACCUCACGUGCCUGCC------UGUAGUGCUG----------- .((((....(((((......))))).(((((((((.....))))))))).((--------.((.((.((....)).)))).)).)------))).......----------- ( -18.70, z-score = -1.26, R) >consensus AAAGGAAAUGUCGCGCAAAUGCGGCCUCGUUAAUUGUUUUGAUUAAUGAAC_________GGCGGCAUGACCUCACGUUCCU_CAG_GGCCUGCAGAUGGG_G_________ ...((....(((((......))))).(((((((((.....))))))))).....................))........................................ (-13.33 = -13.51 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:05 2011