| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,554,460 – 23,554,573 |
| Length | 113 |
| Max. P | 0.955109 |
| Location | 23,554,460 – 23,554,573 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 52.99 |
| Shannon entropy | 0.66915 |
| G+C content | 0.38109 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.955109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23554460 113 - 27905053 GUUAUGAGAUAGUCUACAUAGAGUAGACAGUCCGAAGUCGAUUUGCCUUUUUUGAACCCGAAUUGUUUGUCGUUAAUUAGGUUGUUGUAUGUCACUAGCCACCAGAGUCUUUU .....(((((.((((((.....))))))....(((...(((((((..(((...)))..)))))))....))).......(((((.((.....)).)))))......))))).. ( -22.00, z-score = -0.55, R) >droSec1.super_102 135746 86 + 145419 GCUAAUAGGCGGUCUAUUAGAAGUAGACUAUAUAGC--CGAUUUACAUUUCUUAAAACCAGUUUGACUAUUGUGGAUUAACUUGUUGU------------------------- ..(((((((((((((((.....))))))).....))--)((((((((.(..(((((.....)))))..).))))))))....))))).------------------------- ( -17.00, z-score = -0.73, R) >droPer1.super_16 1032975 108 + 1990440 GUGGCUAGGUGGUCUACGUAGAGUGGGCUAUCUAGCACCGAUUUGCCUCGUUUAAAACAUAGUUGGCUGUUGUGGAAUAGUUUGUUAUUCAAAACAAACCACCAUAAU----- ...((((((((((((((.....))))))))))))))........(((.................))).(((((((....(((((((......)))))))..)))))))----- ( -36.43, z-score = -3.38, R) >consensus GUUAAUAGGUGGUCUACAUAGAGUAGACUAUCUAGC__CGAUUUGCCUUUUUUAAAACCAAAUUGACUGUUGUGGAUUAGCUUGUUGU_____AC_A_CCACCA_A_U_____ ....(((((((((((((.....))))))))))))).............................................................................. (-11.14 = -11.93 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:01 2011