| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,542,750 – 23,542,878 |
| Length | 128 |
| Max. P | 0.753012 |
| Location | 23,542,750 – 23,542,840 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.18 |
| Shannon entropy | 0.43176 |
| G+C content | 0.43031 |
| Mean single sequence MFE | -13.39 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.65 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23542750 90 + 27905053 ------------------------ACACACUCUCCAGUUGGCUCGCACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC ------------------------.........((.(.((((((((..........))..........(((....))).)))))).).((.........))))........... ( -13.50, z-score = -0.50, R) >droSim1.chr3R 23271670 90 + 27517382 ------------------------ACACACUCUCCCGUUCGCUCGCACACAUUUACGCACAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC ------------------------..........(((((((...((..........))..................((((.((.....)).)))).)))))))........... ( -14.30, z-score = -1.63, R) >droSec1.super_22 185365 90 + 1066717 ------------------------ACACACUCCCCCGUUCGCUCGCACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC ------------------------..........(((((((...((..........))..................((((.((.....)).)))).)))))))........... ( -14.30, z-score = -1.65, R) >droEre2.scaffold_4820 5977048 90 - 10470090 ------------------------ACACACUCUUUAGUUCGCUCACACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC ------------------------..............((((((........................(((....))).(((..((....))..)))))))))........... ( -13.10, z-score = -1.74, R) >droAna3.scaffold_13340 4551890 114 - 23697760 GCAUACUCUUUAGUUGGACAACGCUCAAAUACACUCACACACCCAAACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC .....................(((((..........................................(((....))).(((..((....))..))))))))............ ( -13.10, z-score = 0.05, R) >dp4.chr2 3902432 101 + 30794189 ACACACUCUUUAGUUAGAGA-------------CACACACACGCGCAUAUAUACACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC .....((((......)))).-------------.........(((..........)))....((((.(((...((((..(((((....).))))..)))).))).))))..... ( -15.90, z-score = -1.59, R) >droPer1.super_7 3996973 101 - 4445127 ACACACUCUUUAGUUAGAGA-------------CACACACACGCGCAUAUAUACACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC .....((((......)))).-------------.........(((..........)))....((((.(((...((((..(((((....).))))..)))).))).))))..... ( -15.90, z-score = -1.59, R) >droWil1.scaffold_181089 3786233 83 + 12369635 -------------------------------CUUCAACACACACACACACAUAUACGCAUAUUAAAUACCAUCCUUGGAGACUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC -------------------------------...............................((((.(((...((((..((...........))..)))).))).))))..... ( -7.00, z-score = -0.46, R) >consensus ________________________ACACACUCUCCCACACACUCGCACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCC ..............................................................((((.(((...((((..(((((....).))))..)))).))).))))..... ( -9.52 = -9.65 + 0.13)
| Location | 23,542,769 – 23,542,878 |
|---|---|
| Length | 109 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.30 |
| Shannon entropy | 0.24075 |
| G+C content | 0.40734 |
| Mean single sequence MFE | -18.75 |
| Consensus MFE | -13.78 |
| Energy contribution | -13.41 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23542769 109 + 27905053 ---------CGCACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCACC-- ---------.((..........))..........(((....))).((((..............((((((.........))))))......(((((((.......)))))))))))...-- ( -19.30, z-score = -2.17, R) >droSim1.chr3R 23271689 109 + 27517382 ---------CGCACACAUUUACGCACAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUCGCUUUUUACACAAGCGACACUCACC-- ---------.((..........))..........(((....))).((((..............((((((.........))))))......(((((((.......)))))))))))...-- ( -21.40, z-score = -3.31, R) >droSec1.super_22 185384 109 + 1066717 ---------CGCACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCUACACUCACC-- ---------.((..........))..........(((....))).((((..............((((((.........))))))......((.((((.......)))).))))))...-- ( -15.50, z-score = -1.08, R) >droYak2.chr3R 5889468 112 - 28832112 ------ACACACACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACGCUCACU-- ------................((..........(((....))).((....)).)).......((((((.........))..........(((((((.......)))))))))))...-- ( -20.10, z-score = -2.56, R) >droEre2.scaffold_4820 5977067 109 - 10470090 ---------CACACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCACA-- ---------.........................(((....))).((((..............((((((.........))))))......(((((((.......)))))))))))...-- ( -18.90, z-score = -2.68, R) >droAna3.scaffold_13340 4551930 112 - 23697760 ------ACCCAAACACAUUUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCACA-- ------............................(((....))).((((..............((((((.........))))))......(((((((.......)))))))))))...-- ( -18.90, z-score = -2.54, R) >dp4.chr2 3902459 114 + 30794189 ------ACGCGCAUAUAUACACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCGCAGU ------..(((.........(((.....((((.(((...((((..(((((....).))))..)))).))).))))....)))........(((((((.......)))))))...)))... ( -22.30, z-score = -1.68, R) >droPer1.super_7 3997000 114 - 4445127 ------ACGCGCAUAUAUACACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCGCAGU ------..(((.........(((.....((((.(((...((((..(((((....).))))..)))).))).))))....)))........(((((((.......)))))))...)))... ( -22.30, z-score = -1.68, R) >droWil1.scaffold_181089 3786245 108 + 12369635 ---------CACACACAUAUACGCAUAUUAAAUACCAUCCUUGGAGACUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUU-ACACAAGUGCCGCCCACA-- ---------.............((((........(((....))).........((((......((((((.........))))))........))))...-......))))........-- ( -14.54, z-score = -0.43, R) >droMoj3.scaffold_6540 1792506 117 - 34148556 AUUCACACAUACACCCAUACUCGUAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGUGCCGCCCAC--- .....(((..........((((((((.....))))..((....))))))....((((......((((((.........))))))........))))..........)))........--- ( -15.34, z-score = -0.63, R) >droVir3.scaffold_12855 8102783 117 - 10161210 UUUUACACACG-AGCCGCACACAUAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGUGCCGCCCACA-- ..........(-.((.((((..............(((....)))...((.(..((((......((((((.........))))))........))))..).))....)))).)).)...-- ( -21.14, z-score = -2.12, R) >droGri2.scaffold_14830 5836447 105 - 6267026 -------------CACACAUAUAUAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGUGCUGCCCACA-- -------------.....................(((....)))...((...(((((((....((((((.........))))))......((........))...)))))))...)).-- ( -15.30, z-score = -0.67, R) >consensus _________CGCACACAUAUACGCAUAUUAAAUACCAUCCUUGGAGAGUCAUCAGCAUUCCUCGAGCGGUUUUUAUUUCCGUUUUCAUUAGUUGCUUUUUACACAAGCGACACUCACA__ .....................(((..........(((....)))...((.(..((((......((((((.........))))))........))))..).))....)))........... (-13.78 = -13.41 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:59 2011