Locus 11752

Sequence ID dm3.chr3R
Location 23,524,507 – 23,524,627
Length 120
Max. P 0.670228
window16150

overview

Window 0

Location 23,524,507 – 23,524,627
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.83
Shannon entropy 0.34499
G+C content 0.31786
Mean single sequence MFE -26.71
Consensus MFE -14.50
Energy contribution -16.51
Covariance contribution 2.01
Combinations/Pair 1.13
Mean z-score -2.07
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.670228
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23524507 120 + 27905053
UCCAUUACUCUAGAGCCAUUGAUUGGUACAUUAUUUUUGUUGAAUGGAAUGAUUCAUUUCAAUCGUUCUUAUCAUAUAAUUUCAAAGGAAAUAACUGGGUAAUGUCCCCACGUAUCAAAA
..((((((.((((.((((.....))))...(((((((..(((((.(((((((((......)))))))))...........)))))..)))))))))))))))))................ ( -28.20, z-score =  -2.31, R)
>droEre2.scaffold_4820 5958934 112 - 10470090
UCCAUUUCUUUUGAGCAAGUGAUUGGAAC--------UGUUGAAUUGAAUGAUUCAUUCCGAUUGUUCUUAUCAUAUGAUUUAAAAGAAAAUAAUAGGGUAAUGAACCCACGUAACAAAA
....(((((((((((((.(((((.(((((--------.((((...(((.....)))...)))).))))).))))).)).)))))))))))......((((.....))))........... ( -30.30, z-score =  -3.74, R)
>droYak2.chr3R 5869583 114 - 28832112
UCGAUUUUUUUUAAGACAGUGAUCGGAACUUUAUCUCUGUUGAAUUGAAUGAUUCAUUC------UUCUUAUCAUAUAAUUUGAACGGAAAUAAUCGGGUCAUGUACCCGCGAAACCAAA
..((((..............))))((....((((.((((((((((((.(((((......------.....))))).)))))).)))))).)))).(((((.....))))).....))... ( -21.64, z-score =  -0.17, R)
>consensus
UCCAUUUCUUUUGAGCCAGUGAUUGGAAC_UUAU_U_UGUUGAAUUGAAUGAUUCAUUCC_AU_GUUCUUAUCAUAUAAUUUAAAAGGAAAUAAUAGGGUAAUGUACCCACGUAACAAAA
....(((((((((((...(((((.(((((...........((((((....))))))........))))).)))))....)))))))))))......(((.......)))........... (-14.50 = -16.51 +   2.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:56 2011