| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,513,509 – 23,513,601 |
| Length | 92 |
| Max. P | 0.998489 |
| Location | 23,513,509 – 23,513,601 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 59.76 |
| Shannon entropy | 0.80912 |
| G+C content | 0.56170 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -12.64 |
| Energy contribution | -12.69 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.68 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.38 |
| SVM RNA-class probability | 0.998489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23513509 92 + 27905053 ------ACCACUGUGGAUGCACUUCCUCCAUGCAAAAUCCGCUUCAGAAGACGACGACGUCUGUGCAGACGACUGGCCAAGGAGGGAGUGCGUCGAAU ------.........((((((((((((((..((......((((.((..(((((....))))).)).)).))....))...)))))))))))))).... ( -36.70, z-score = -3.03, R) >droSim1.chr3R 23240650 92 + 27517382 ------ACCACUGUGGAUGCACUUCCUCCAUGCAACAUCCGCUUCAGAAGACGACGACGUCUUUGCAGACGACUGCCCAAGGAGGGAGUGCGUCGAAC ------.........((((((((((((((.................(((((((....)))))))((((....))))....)))))))))))))).... ( -39.10, z-score = -4.25, R) >droSec1.super_22 156587 92 + 1066717 ------ACCACUGUGGAUGCACUUCCUCCAUGGAACAUCCGCUUCAGAAGACGACGACGUCUUUGCAGACGACUGCCCAAGGAGGAAGUGCGUCGAAU ------.........((((((((((((((.(((.............(((((((....)))))))((((....))))))).)))))))))))))).... ( -43.40, z-score = -5.93, R) >droYak2.chr3R 5858628 80 - 28832112 ------CCCGCUGUGGGUGCACUUCCUCCGU------------UCAGACGACGACGCCGCUUUUGCAGACGACUGCUUAAGGAGGGAGUGCGUCGAAU ------(((.....))).(((((((((((((------------(.....))))......(((..((((....))))..)))))))))))))....... ( -30.10, z-score = -1.30, R) >droEre2.scaffold_4820 5946119 92 - 10470090 ------ACCACUGUGGGUGCACUCCCUCCAUGCGACAUCCGCUUCAGAAGACGACGACGCUUUUGCAGGCGACUGCUCAAGGAGGGAGUGCGUCGAAU ------.........(..(((((((((((.((.(.((..(((((((((((.((....)))))))).)))))..))).)).)))))))))))..).... ( -43.50, z-score = -4.21, R) >droAna3.scaffold_13340 4523256 81 - 23697760 -----------------AGUGAUUCCACGUUUCAAUCUCCUUUGCAGGCGACGACGACGUUGCCGGAGUCGCAUGGUCAGGGUGGGUGUGGUGCGGCU -----------------..........(((.(((.((.((((.((..(((((..((.......))..)))))...)).)))).))...))).)))... ( -25.30, z-score = 0.89, R) >dp4.chr2 3871934 98 + 30794189 CCUCUAUUCUUAAAGGUCACUUUUGGUGUUUUCUUCGCCUGCAUCAACCGCCGGAGACGCUUUGCAAUGCGACUCAACCGACUGGGAGUGCACCUCCU .............((((((((((..(((((....((((.((((......((.(....)))..))))..))))...)))..))..)))))).))))... ( -26.00, z-score = -0.97, R) >droPer1.super_7 3966096 98 - 4445127 CCUCUAUUCUUAAAGGUCACUUGUGGUGUUUUCUUCGCCUGCAUCAACCGCCGGAGACGCUUUGCAAUGCGACUCAACCGACUGGGAGUGCACCUCCU .............(((((((((((((((.......)))).)).(((..((...(((.(((........))).)))...))..)))))))).))))... ( -24.30, z-score = -0.01, R) >consensus ______ACCACUGUGGAUGCACUUCCUCCAUGCAACAUCCGCUUCAGAAGACGACGACGCUUUUGCAGACGACUGCCCAAGGAGGGAGUGCGUCGAAU .............(((...((((((((((..............((.......))...((((......)))).........))))))))))..)))... (-12.64 = -12.69 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:55 2011