| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,825,927 – 8,826,026 |
| Length | 99 |
| Max. P | 0.685487 |
| Location | 8,825,927 – 8,826,026 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 68.11 |
| Shannon entropy | 0.65411 |
| G+C content | 0.49828 |
| Mean single sequence MFE | -30.34 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.83 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8825927 99 + 23011544 GAACAGGUUUCGCC-GUCGUCC-----------GGAGAAACAGAAAGGUGCUCAAUUCCGCCCAGUGUGGAGGUAUUUUUUCGGUGUUCCCGCUUCUCGCAU--ACGAAAAAA-------- (((((.(((((.((-(.....)-----------)).))))).((((((((((....(((((.....)))))))))))))))...)))))..((.....))..--.........-------- ( -26.10, z-score = -0.05, R) >droSec1.super_3 4299953 99 + 7220098 GAACAGGUUUCGCC-GUCGUCC-----------GGAGAAACAGAAAGGUGCUCAAUUCCGCCCAGUGUGGAGGUAUUUUUUCGGUGUUCCCGCUUCUCGAAU--ACGAAAAAA-------- (((((.(((((.((-(.....)-----------)).))))).((((((((((....(((((.....)))))))))))))))...))))).......(((...--.))).....-------- ( -25.60, z-score = 0.07, R) >droYak2.chr2L 11471621 108 + 22324452 GAACAGGUUUCGCC-GUCGUCC-----------GGAGAAACAGAAAGGUGCUUAAUUCCGCCCAGUGUGGAGGUAUUUUUUCGGUGUUCCCGCUUCUCGCUUCUACGAAAAAAAAAAACA- (((((.(((((.((-(.....)-----------)).))))).((((((((((....(((((.....)))))))))))))))...))))).......(((......)))............- ( -25.80, z-score = 0.28, R) >droEre2.scaffold_4929 9417287 99 + 26641161 GAACAGGUUUCGCC-GUCGUCC-----------GGAGAAACAGAAAGGUGCUCAAUUCCGCCCAGUGUGGAGGUAUUUUUUCGGUGUUCCCGCUGCUGAGAU--ACGAAAAGU-------- ......(((((.((-(.....)-----------)).)))))..........((..((((((.....))))))(((((((..(((((....)))))..)))))--)))).....-------- ( -26.70, z-score = 0.06, R) >droAna3.scaffold_12916 10488128 92 + 16180835 GAACAGGUUUCGCC-GUCGAC------------GGAGAAACAGAAAGGUGCUCAAUUCCGUAUAGUGUGGAGGUAUUUUUUCGGUGUUCCCGCAACUAUCCCGCA---------------- (((((.(((((.((-(....)------------)).))))).((((((((((....((((.......))))))))))))))...)))))..((.........)).---------------- ( -23.10, z-score = 0.18, R) >dp4.chr4_group5 1620693 90 - 2436548 GAACAGGUUUCGAC-GCCGUCCACUUUU--GACGGAGAAACAGAAAGGUGCUCAAUUCCGCAUAGUGUGGAGGUAUUUUUUCCUGGACACCGC---------------------------- ......(((((...-.(((((.......--))))).))))).....((((..((..(((((.....)))))((........))))..))))..---------------------------- ( -28.00, z-score = -1.61, R) >droPer1.super_5 1591054 90 - 6813705 GAACAGGUUUCGAC-GCCGUCCACUUUU--GACGGAGAAACAGAAAGGUGCUCAAUUCCGCAUAGUGUGGAGGUAUUUUUUCCUGGACACCGC---------------------------- ......(((((...-.(((((.......--))))).))))).....((((..((..(((((.....)))))((........))))..))))..---------------------------- ( -28.00, z-score = -1.61, R) >droWil1.scaffold_180772 141286 119 + 8906247 GAACAGGUUUCGCCUGUAUUUCACUUGG--GACGGAGAAACAGAAAGGUGCUCAAUUCCGUGUAGUGUGGAGGUAUUUUUUUCGGCGCGCUGAUUUUUGCCAACCACAAAACAAGAAAAAG ..(((((.....))))).((((....((--((..(((...(.....)...)))..)))).(((..(((((.((((......((((....))))....))))..)))))..))).))))... ( -33.00, z-score = -0.97, R) >droVir3.scaffold_12723 4825147 120 + 5802038 GAACAGGUUUCGCC-GCUGUCCGCUCGCUCGACGGCGAAACAGAAAGGUGCUCAAUUCCGCGUUGUGUGGAGGUAUUUUUCGACGUCUCACGCAACGCGCUGAUUUUUUGCCCAAAUAGCA ......((((((((-(.((..(....)..)).))))))))).....((.((..((((.(((((((((((((.((........)).)).)))))))))))..))))....))))........ ( -43.20, z-score = -1.67, R) >droMoj3.scaffold_6500 10798401 120 + 32352404 GAACAGGUUUCGCC-GCUGUCCGUUCGCUCAACGGCGAAACAGAAAGGUGCUCAAUUCCGCGUUGUGUGGAGGUAUUUUUCGACGUCUCACGCAACGCGCUGAUUUUUUGCCCAAAUAGCA ......((((((((-(.((..(....)..)).))))))))).....((.((..((((.(((((((((((((.((........)).)).)))))))))))..))))....))))........ ( -43.90, z-score = -2.47, R) >consensus GAACAGGUUUCGCC_GUCGUCC___________GGAGAAACAGAAAGGUGCUCAAUUCCGCCUAGUGUGGAGGUAUUUUUUCGGGGUUCCCGCUUCUCGCAU__ACGAAAA_A________ ......(((((.((...................)).))))).((((((((((....(((((.....)))))))))))))))........................................ (-14.95 = -14.83 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:02 2011