Locus 11749

Sequence ID dm3.chr3R
Location 23,501,211 – 23,501,319
Length 108
Max. P 0.596777
window16147

overview

Window 7

Location 23,501,211 – 23,501,319
Length 108
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 81.50
Shannon entropy 0.24694
G+C content 0.35841
Mean single sequence MFE -23.10
Consensus MFE -15.92
Energy contribution -17.03
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.596777
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23501211 108 + 27905053
-----------CUUAUUGUGCCAUGGGUAACAUGAACCCAAGUUCCCCUUACCGAGUUACAAGUUUCCUUUCUUGAUUAACUUACUAUUAUAAUUUCUUAUGGUGCAUAUCUGUAAACC
-----------.....((..((((((((((...((((....))))...)))))((((((((((........))))..))))))...............)))))..))............ ( -24.30, z-score =  -2.95, R)
>droYak2.chr3R 5846218 117 - 28832112
GCGGCAAGAGGCUUCUUGUGUC-UGGGUAACAUGAACCCAAGUUCCCCUAACUGAAUUUCAAGUUUUCAUUUUUGAUUA-CUUAAAAUUAUAAUUUUUUAUGAUGCAUAUCCGUAAGCC
..(((....((.....((((((-.(((.(((.((....)).))).)))......(((((.((((..(((....)))..)-))).)))))............))))))...))....))) ( -24.30, z-score =  -1.20, R)
>droSec1.super_22 144434 107 + 1066717
-----------CUUAUUGUGCCAUGGGUAACAUAAACCCAAGUUCCCCUUACCGAGUUACAAGUU-CCUUUCUUGAGUAACUUACUAUUAUAAUUUCUUAUGGUGCAUAUUUGUAAACC
-----------.....((..((((((((((....(((....)))....)))))((((((((((..-.....)))..)))))))...............)))))..))............ ( -20.70, z-score =  -1.48, R)
>consensus
___________CUUAUUGUGCCAUGGGUAACAUGAACCCAAGUUCCCCUUACCGAGUUACAAGUUUCCUUUCUUGAUUAACUUACUAUUAUAAUUUCUUAUGGUGCAUAUCUGUAAACC
................((..((((((((((...((((....))))...)))))((((((((((........))))..))))))...............)))))..))............ (-15.92 = -17.03 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:53 2011