Locus 11747

Sequence ID dm3.chr3R
Location 23,489,640 – 23,489,737
Length 97
Max. P 0.878392
window16144

overview

Window 4

Location 23,489,640 – 23,489,737
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.67
Shannon entropy 0.07780
G+C content 0.38428
Mean single sequence MFE -22.70
Consensus MFE -22.14
Energy contribution -22.38
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.03
SVM RNA-class probability 0.878392
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23489640 97 + 27905053
AUAAAAGUAUGCUUCACUUUUUGCCUAGCUUAAUGUAGGCUUGGAAACUUUUCCUGCGCCUGUGUGUAGUACAUUCAGUAUGCUUUAUACACAACCC
...((((((((((..........((.((((((...)))))).)).........((((((....)))))).......))))))))))........... ( -22.30, z-score =  -1.22, R)
>droSim1.chr3R 23220145 97 + 27517382
AUAAAAGUAUGCUCCACUUUUUGCCUAGCUUAAUGUAGACUUGGAAACUUUUCCUGCGCUUGUGUGUAGUACAUUCAGUAUGCUUUAAACACAACCC
...(((((((((((((...(((((..........)))))..))))........((((((....))))))........)))))))))........... ( -20.30, z-score =  -1.29, R)
>droSec1.super_22 132884 97 + 1066717
AUAAAAGUAUGCUCCACUUUUUGCCUAGCUUAAUGUAGGCUUGGAAACUUUUCCUGCGCUUGUGUGUAGUACAUUCAGUAUGCUUUAUACACAACCC
...(((((((((((((......(((((.(.....)))))).))))........((((((....))))))........)))))))))........... ( -24.50, z-score =  -2.00, R)
>droYak2.chr3R 5834597 97 - 28832112
AAAAAAGUAUGCUACACUUUUUGCCUAGCUUAAUGUAGGCUUGGAAACUUUUCCUGCGCUUGUGUGUAGUACAUUCAGUAUGCUUUAUACACAACCC
...((((((((((..........((.((((((...)))))).)).........((((((....)))))).......))))))))))........... ( -24.10, z-score =  -1.66, R)
>droEre2.scaffold_4820 5922339 96 - 10470090
AAAAAAGUAUGCUACACUUUUUGCCUAGCUUAAUGUAGGCUUGGAAACUUUUCCUGCGCUUGUGUGCAGUACAUUCAGUUUGCUUUAUACACAAUC-
...((((((.(((..........((.((((((...)))))).)).........((((((....)))))).......))).))))))..........- ( -22.30, z-score =  -0.96, R)
>consensus
AUAAAAGUAUGCUACACUUUUUGCCUAGCUUAAUGUAGGCUUGGAAACUUUUCCUGCGCUUGUGUGUAGUACAUUCAGUAUGCUUUAUACACAACCC
...((((((((((..........((.((((((...)))))).)).........((((((....)))))).......))))))))))........... (-22.14 = -22.38 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:51 2011