| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,487,367 – 23,487,463 |
| Length | 96 |
| Max. P | 0.956683 |
| Location | 23,487,367 – 23,487,463 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 64.03 |
| Shannon entropy | 0.77433 |
| G+C content | 0.46568 |
| Mean single sequence MFE | -25.79 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.11 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23487367 96 - 27905053 GCUAUUUAUCAAUGACUUGCGCACAUUAAUCUGCGCAGAUUCGUGGCAAC-AAUCGGCUGCU--GAUAGCAGAUGUUCAAUCAAGGACCAAA--UCGGCCU----- ((((((..........(((((((........)))))))....(..((...-.....))..).--)))))).(((.....))).(((.((...--..)))))----- ( -25.40, z-score = -0.82, R) >droSim1.chr3R 23217210 96 - 27517382 GCUAUUUAUCAAUGACUUGCGCACAUUAAUCUGCGCAGAUUCGUGGCAAC-AAUCGGCUGCU--GAUAGCAGCUGUUCAAUCAAGGACCAAA--UCGGCGU----- (((((((.((..(((.(((((((........))))))).....((....)-)..(((((((.--....))))))).....)))..))..)))--).)))..----- ( -27.50, z-score = -1.05, R) >droSec1.super_22 130626 96 - 1066717 GCUAUUUAUCAAUGACUUGCGCACAUUAAUCUGCGCAGAUUCGUGGCAAC-AAUCGGCUGCU--GAUAGCAGCUGUUCAAUCAAGGACCAAA--UCGGCCU----- (((((..(((.......((((((........)))))))))..)))))...-...(((((((.--....)))))))........(((.((...--..)))))----- ( -29.41, z-score = -1.94, R) >droYak2.chr3R 5832255 96 + 28832112 GCUAUUUAUCAAUGACUUGCGCACAUUAAUCUGCGCAGAUUCGUGGCCAC-AAUCGGCUGCU--GAUAGCAGCUGUUCAAUCAAGGACCAAA--UCGGCCU----- ...........((((.(((((((........)))))))..))))((((..-....((((((.--....))))))((((......))))....--..)))).----- ( -30.80, z-score = -2.27, R) >droEre2.scaffold_4820 5920121 96 + 10470090 GCUAUUUAUCAAUGACUUGCGCACACUAAUCUGCGCAGAUUCGUGGCAAC-AAUCGGCUGCU--GAUAUCAGCUGUUCAAUCAAGGACCAAA--UCGGCCC----- (((((..(((.......((((((........)))))))))..)))))...-....(((((((--(....)))).((((......))))....--..)))).----- ( -27.11, z-score = -1.82, R) >droAna3.scaffold_13340 4494942 95 + 23697760 GCGGCUUAUCAAUGACUUGCGCACUUUAAGCUGCGCACCUAAAUGGAAA--AAUCGGCUUUU--GGUAACAGCUGGAAACUGAAGGACUCUG--UCGGCCU----- ..((((.......(((.((((((........))))))((.....))...--..((((.(((.--.((....))..))).))))........)--)))))).----- ( -24.01, z-score = -0.41, R) >dp4.chr2 3842447 98 - 30794189 AUGAUUUAUCAAUGAA-UGCGCACUUUCAUCUGCGCAGGAAUGCCCUCAGCCAUCGGCUGAU--GAUAACAGCUGUUUGAUUAGGGACUACACUCUGGACC----- .....((((((.....-((((((........))))))((.....))((((((...)))))))--)))))...........((((((......))))))...----- ( -24.10, z-score = -0.40, R) >droPer1.super_7 3936645 98 + 4445127 AUGAUUUAUCAAUGAA-UGCGCACUUUCAUCUGCGCAGGAAUGCCCUCAGCCAUCGGCUGAU--GAUAACAGCUGUUUGAUUAGGGACUACACUCUGGACC----- .....((((((.....-((((((........))))))((.....))((((((...)))))))--)))))...........((((((......))))))...----- ( -24.10, z-score = -0.40, R) >droWil1.scaffold_181089 3729076 95 - 12369635 ----CGCAUUAACCA-UUGCGCAUCUGUAUCUGCAUGGAUACAUAGAAU--CAUUUGUUCAUCUUUCAGCUGUUUUGAUUGAGAACACUCGGAUCUUAGCCC---- ----.(((.......-.)))((...(((((((....)))))))((..((--(...(((((.((..((((.....))))..)))))))....)))..))))..---- ( -21.40, z-score = -1.04, R) >droVir3.scaffold_12855 8032662 104 + 10161210 AAUCUUUAUCAAUGAGUUGCGCAAUUGCCACUGCGCAGAGUUCGCCCAUUGUGCCAGCUUCUGCUUUGGGAGUUUGCUAACAGCUGCUUCAU--GCAAGCCAGUCC .........(((((.((((((((........))))))......)).))))).((.(((((((.....))))))).)).....(((((.....--)).)))...... ( -25.30, z-score = 1.40, R) >droGri2.scaffold_15074 5613607 92 + 7742996 --UCUUUAUCAAUGAACUGCGCACUUUGAACUGCGCAGAUUUUGGACCACUUAUCAGCUGCUCAGAUAACAGCUG---AUUUUA--UUUAAG--CCGGCCC----- --..............(((((((........))))))).....((.((.(((((((((((.........))))))---).....--..))))--..)))).----- ( -24.61, z-score = -2.70, R) >consensus GCUAUUUAUCAAUGACUUGCGCACAUUAAUCUGCGCAGAUUCGUGGCAAC_AAUCGGCUGCU__GAUAGCAGCUGUUCAAUCAAGGACUAAA__UCGGCCC_____ .................((((((........)))))).................((((((.........))))))............................... (-12.02 = -12.11 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:49 2011