| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,454,787 – 23,454,879 |
| Length | 92 |
| Max. P | 0.683483 |
| Location | 23,454,787 – 23,454,879 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 70.80 |
| Shannon entropy | 0.58869 |
| G+C content | 0.53273 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -8.76 |
| Energy contribution | -11.17 |
| Covariance contribution | 2.41 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23454787 92 - 27905053 ---GCGGCCGGUUGGCUUGGUAAAUAUGCUCCACUUUCCGACUGCAUCACUUUAUUCCUCACUCUUUGAGCCGAUCAACCCAAGCCAGCUGCCUA ---..(((.(((((((((((.....((((..............))))..........((((.....)))).........)))))))))))))).. ( -27.94, z-score = -2.99, R) >droWil1.scaffold_181089 3693006 77 - 12369635 ---------------UUUGCC---UAUGCCUGUUUCUCCCCCCACUCAACCCCUUGGCUGACUCCACGACACGAGGCGACGGAGUAAACAUUCUA ---------------......---......(((((((((......(((.((....)).)))(((........))).....)))).)))))..... ( -12.80, z-score = 0.07, R) >droAna3.scaffold_13340 4462328 85 + 23697760 CCCGGAGCCGG-CGGUUGGGCAAAUAUGCUCCACUUUGCAAAUGCAUC-UCCUAUUC------CUUUGAAAGGCUCAAACU--GCCAGCUGCCUA ...(((((.((-(((((((((.....(((........)))........-..((.(((------....))))))))).))))--))).))).)).. ( -26.00, z-score = -0.87, R) >droEre2.scaffold_4820 5887546 90 + 10470090 ---CCGGUCGGUUGGCUUGGUAAAUAUGCUCCACUUUCCGACUGCAUCGCUUUAUUCCCUGCUCUUUGAGCCGAUCAACCU--GCCAGCUGCCUA ---..((.((((((((..(((....((((..............))))...........(.((((...)))).)....))).--)))))))))).. ( -24.74, z-score = -1.67, R) >droYak2.chr3R 5799946 90 + 28832112 ---GCGGGCGGUUGGCUUGGUAAAUAUGCUCCACUUUCCGACUGCAUCGCUUUAUUCCUUACUCUUUGAGCCGAUCAACCU--GCCAGCUGCCUA ---..(((((((((((..(((....((((..............)))).((((...............))))......))).--))))))))))). ( -28.20, z-score = -2.37, R) >droSec1.super_22 98176 91 - 1066717 ---GCGGCCGGUUGGCUUGGUAAAUAUGCUCCACUUUCCGACUGCAUCGCUUUAUUCCUCACUCUUUGAGCCGAUCAA-CCAAGCCAGCUGCCUA ---..(((.((((((((((((....((((..............))))..........((((.....)))).......)-)))))))))))))).. ( -29.74, z-score = -3.14, R) >droSim1.chr3R 23188520 91 - 27517382 ---GCGGCCGGUUGGCUUGGUAAAUGUGCUCCACUUUCCGACUGCAUCGCUUUAUUCCUCACUCUUUGAGCCGAUCAA-CCAGGCCAGCUGCCUA ---..(((.((((((((((((....((((..............))))..........((((.....)))).......)-)))))))))))))).. ( -29.74, z-score = -2.02, R) >consensus ___GCGGCCGGUUGGCUUGGUAAAUAUGCUCCACUUUCCGACUGCAUCGCUUUAUUCCUCACUCUUUGAGCCGAUCAACCC__GCCAGCUGCCUA .....((.((((((((.........((((..............))))..................((((.....)))).....)))))))))).. ( -8.76 = -11.17 + 2.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:46 2011