| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,420,561 – 23,420,671 |
| Length | 110 |
| Max. P | 0.684376 |
| Location | 23,420,561 – 23,420,671 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.50555 |
| G+C content | 0.40043 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -12.74 |
| Energy contribution | -13.74 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23420561 110 + 27905053 UGCGUCUAUCGCACUUCAGACGGCAAUACUUAUAAUCCUAUUACAUAUGUGAGUGCGAGUACUCUCAAUCUUUAACACA-UUUCCCUGGGAACUUGGAAUUAAAAGGCAUU ...((((.((((((((((....(.((((..........)))).)...)).)))))))).....................-.((((..(....)..)))).....))))... ( -19.70, z-score = -0.09, R) >droSim1.chr3R 23152029 110 + 27517382 UGCGUCUAUCGCACUUCAGACGGUAAUACUUAUAAUCCUAUUACAUAUGUGAGUGCGAGUACUCUCAACCUUUAACACA-UUUCCCAGGGAACUAGGAAUAAAAAGGUAUU ...((...((((((((((....((((((..........))))))...)).))))))))..)).....((((((......-.((((.((....)).))))...))))))... ( -26.70, z-score = -2.28, R) >droSec1.super_22 54100 83 + 1066717 UGCGUCUAUCGCACUUCAGACGGUAAU---------CCUAUUACAUAUGUGAGUGCGAGUACUCUCAACAUUUAACACA-UUUCCCUGGCAUU------------------ (((((...((((((((((....(((((---------...)))))...)).))))))))..))...............((-......)))))..------------------ ( -16.40, z-score = -0.99, R) >droYak2.chr3R 5764624 106 - 28832112 UGCGUCUAUCGCACUUCAGACGGUUACACUUAUAAUCCUAUUACAUAUGUGAGUGCGAGCACUC--AACUUUUAACACAAUUUCCCCGGGAAUUUGAGUUCAACCAUU--- ((((.....))))........((((..(((((...((((...((....))(((((....)))))--.....................))))...)))))..))))...--- ( -23.10, z-score = -2.02, R) >droEre2.scaffold_4820 5852730 97 - 10470090 UGCGUCUAUCGCACUUCAGACGGUUAUACUUGUAAUCCUAUUACAUAUGUGAGUGCGAGUACUU---AACUUGGGAACUUGGAAUUUGAUAUCAGCCACU----------- ((((.....))))..(((((((.(((((..((((((...))))))..))))).))(((((.(((---.....))).)))))...)))))...........----------- ( -18.50, z-score = 0.40, R) >consensus UGCGUCUAUCGCACUUCAGACGGUAAUACUUAUAAUCCUAUUACAUAUGUGAGUGCGAGUACUCUCAACCUUUAACACA_UUUCCCUGGGAACUUGGAAU_AA________ ...((...((((((((((....((((((..........))))))...)).))))))))..))................................................. (-12.74 = -13.74 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:43 2011