| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,822,341 – 8,822,439 |
| Length | 98 |
| Max. P | 0.965090 |
| Location | 8,822,341 – 8,822,439 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.15958 |
| G+C content | 0.29183 |
| Mean single sequence MFE | -14.25 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8822341 98 - 23011544 AUCUACAGACCCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -2.15, R) >droSim1.chr2L 8600587 98 - 22036055 AUCUACAGACCCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -2.15, R) >droSec1.super_3 4294407 98 - 7220098 AUCUACAGACCCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -2.15, R) >droYak2.chr2L 11467810 98 - 22324452 AUCCACAGACCCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -2.24, R) >droEre2.scaffold_4929 9413792 98 - 26641161 AUCUACAGACCCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -2.15, R) >droAna3.scaffold_12916 10484385 96 - 16180835 ACAGACAGGC--UAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- ..........--.........-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -1.27, R) >dp4.chr4_group5 1615878 98 + 2436548 AGACACAGACGCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -1.05, R) >droPer1.super_5 1585854 98 + 6813705 AGACACAGACGCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -1.05, R) >droWil1.scaffold_180772 137244 98 - 8906247 AGACACAGACGCUAUUCAGAC-UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- .....................-..........................((((((((..(((((((............)))))))..)))))))).....------- ( -14.10, z-score = -1.05, R) >droMoj3.scaffold_6500 10792968 99 - 32352404 GCAAAGAGAUGCUAUUCAGACGUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA------- (((......)))....................................((((((((..(((((((............)))))))..)))))))).....------- ( -15.70, z-score = -0.77, R) >droGri2.scaffold_15126 7824599 97 - 8399593 ----ACACACAC-AUUUG----UUACUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUCAUUCCAC ----........-.....----..........................((((((((..(((((((............)))))))..))))))))............ ( -14.10, z-score = -2.31, R) >consensus AUACACAGACCCUAUUCAGAC_UUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUA_______ ................................................((((((((..(((((((............)))))))..))))))))............ (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:02 2011