| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,404,635 – 23,404,732 |
| Length | 97 |
| Max. P | 0.762536 |
| Location | 23,404,635 – 23,404,732 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.26514 |
| G+C content | 0.34365 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -14.20 |
| Energy contribution | -15.45 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23404635 97 - 27905053 GCUGCCAAUUUCGUUGUUUGAAUUCAAAUUGGCAACAACCGACGAACUA----------------UAAACUAUAAGAUUUAAUGACCCGCUUAAUCUAUAAGAGCAAAGUUUC (((......(((((((((((....))))(((....))).)))))))...----------------.........(((((.............))))).....)))........ ( -14.62, z-score = -0.70, R) >droEre2.scaffold_4820 5836807 113 + 10470090 GCUGGCAAUUUCGUUAUUUGAAUUCGAAUUCGUAACAACUGACGAACUAAACUUUAGCUGCCAGUUGGCAUAUAAGAUUUAACGACCUAAUUCAUCUAUAAGAGCAAAGUUUC .........(((((((.(((....((....))...))).)))))))..(((((((.((((((....)))......((.(((......))).)).........)))))))))). ( -21.10, z-score = -0.81, R) >droSec1.super_22 38236 97 - 1066717 GCUGCCAGUUUCGUUGUUUGAAUUCAAAUUGGCAACAACAGACGAACUA----------------UAAACAAUAAGAUUGAAUGACCCAUUUAAUCUAUAAGAGCAAAGUUUC (((...((((.(((((((((....)))))((....))...)))))))).----------------.........((((((((((...)))))))))).....)))........ ( -20.50, z-score = -2.34, R) >droSim1.chr3R 23135939 97 - 27517382 GCUGCCAAUUUCGUUGUUUGAAUUCAAAUUGGCAACAAACGACGAACUA----------------UAAACUAUAAGAUUGAAUGACCCAUUUAAUCUAUAAGAGCAAAGUUUC (((......(((((((((((...((.....))...)))))))))))...----------------.........((((((((((...)))))))))).....)))........ ( -22.80, z-score = -3.73, R) >consensus GCUGCCAAUUUCGUUGUUUGAAUUCAAAUUGGCAACAACCGACGAACUA________________UAAACUAUAAGAUUGAAUGACCCAUUUAAUCUAUAAGAGCAAAGUUUC (((......(((((((((((....))))(((....))).)))))))............................((((((((((...)))))))))).....)))........ (-14.20 = -15.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:41 2011