| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,404,317 – 23,404,422 |
| Length | 105 |
| Max. P | 0.620040 |
| Location | 23,404,317 – 23,404,422 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Shannon entropy | 0.30255 |
| G+C content | 0.51311 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -23.17 |
| Energy contribution | -22.13 |
| Covariance contribution | -1.04 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23404317 105 + 27905053 GACACUGGGAGC--CCACAAGGAGGAGCGCUUCAUAUGCGCACAUUCGUAUGCGGAGGCAUUUUAUGGCAGCAUUACGUUCCCCCUC-UUCCCCU-UUACAGUGAAAAC------ ..(((((((((.--.....(((.((((((......((((((.(((....((((....))))...))))).))))..)))))).))).-.....))-)).))))).....------ ( -31.50, z-score = -1.46, R) >droEre2.scaffold_4820 5836466 108 - 10470090 GAUACUGGGAGCU---AAGAGGAGGAGCGCUUCAUAUGUGCACAUUUGUAUGCGGAGGCAUUUUAUGGCAGCAUUAUACGUUCCCCU----UUCCUCCACAGUGAAAACUCCCUC ..(((((((((..---.(((((.((((((......((((((.(((....((((....))))...)))))).)))....)))))))))----)).)))).)))))........... ( -36.10, z-score = -2.52, R) >droYak2.chr3R 5748209 111 - 28832112 GAUACUGGGCUCCUCCACGAGGAGGAGCGCUUCAUAUGCGCACAUUUGUAUGCGGAGGCAUUUUAUGGCAGCAUUACAUUCCCCCCCAGCUUUCCAUCACAGUGAAAACUC---- ..(((((.((((((((....))))))))(((((.((((((......))))))..))))).....((((.(((................)))..))))..))))).......---- ( -34.59, z-score = -1.90, R) >droSec1.super_22 37930 107 + 1066717 GACACUGGGAGCU-CCGCAAGGAGGAGCGCUUCAUAUGCGCACAUUCGUAUGCGGAGGCAUUUUAUGGCAGCAUUACGUUUCCCUUG-GUCCCCUCUUACAGUGAAAAC------ ..(((((((((..-...(((((.((((((......((((((.(((....((((....))))...))))).))))..)))))))))))-.....))))..))))).....------ ( -34.00, z-score = -1.29, R) >droSim1.chr3R 23135633 107 + 27517382 GACACUGGGAGCU-CCGCAAGGAGGAGCGCUUCAUAUGCGCACAUUCGUAUGCGGAGGCAUUUUAUGGCAGCAUUACGUUUCCCUUG-GUCCCCUCUUACAGUGAAAAC------ ..(((((((((..-...(((((.((((((......((((((.(((....((((....))))...))))).))))..)))))))))))-.....))))..))))).....------ ( -34.00, z-score = -1.29, R) >consensus GACACUGGGAGCU_CCACAAGGAGGAGCGCUUCAUAUGCGCACAUUCGUAUGCGGAGGCAUUUUAUGGCAGCAUUACGUUUCCCCUC_GUCCCCUCUUACAGUGAAAAC______ ..(((((............(((.((.((((.......)))).....(((((((....((........)).))).))))...))))).............)))))........... (-23.17 = -22.13 + -1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:40 2011