| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,400,005 – 23,400,100 |
| Length | 95 |
| Max. P | 0.989111 |
| Location | 23,400,005 – 23,400,100 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.42627 |
| G+C content | 0.44249 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.54 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23400005 95 - 27905053 UGAUGCAUCCGACGGAUGCAUUUUAUUUCGUUGAGCUUUAUUAGCUGACAUCUGCAGAACUGAAGCU--------CACCGU------UUUAUCUCCACCACACACACAC .(((((((((...)))))))))......((.(((((((((....(((.(....))))...)))))))--------)).)).------...................... ( -25.90, z-score = -3.96, R) >droSim1.chr3R_random 1112387 95 - 1307089 UGAUGCAUCCGACGGAUGCAUUUUAUUUCGUUGAGCUUUAUUAGGUGACAACUGCAGAACUGCAGCUAUCCU---UUUAUCUCC---CUUAGGAUCGCCAC-------- .(((((((((...))))))))).....................(((((...(((((....)))))...((((---.........---...)))))))))..-------- ( -26.60, z-score = -2.63, R) >droSec1.super_22 33683 94 - 1066717 UGAUGCAUCCGACGGAUGCAUUUUAUUUCGUUGAGCUUUAUUAGCUGACAACUGCAGAACUGCAGCUACCCU---------------UUUAUCUCCGCCACGCAAACAC .(((((((((...))))))))).......(((.((((.....)))))))..(((((....))))).......---------------...................... ( -22.60, z-score = -2.32, R) >droYak2.chr3R 5743678 104 + 28832112 UGAUGCAUCCGACGGAUGCAUUUUAUUUCACCGAGCUUUAUUAGCUGACAUCUGCAGAACUGAAAUCGUUUUAGGCAAAGCUUCUC-UUUAUCUCCGCCACACAC---- .(((((((((...)))))))))..........(((((((....((........))....(((((.....)))))..)))))))...-..................---- ( -20.90, z-score = -0.82, R) >droEre2.scaffold_4820 5832059 105 + 10470090 AGAUGCAUCCGACGGAUGCAUUUUAUUUAGCCGAGCUUUAUUAGCUGACAUCUGCAGAACUGAAGCCAUUUUAGGCAAAGCUCAUCUUUUAUCUCCGCCACACAC---- ((((((((((...)))))))))).........(((((((.(((((((.(....))))..)))).(((......))))))))))......................---- ( -27.90, z-score = -2.76, R) >consensus UGAUGCAUCCGACGGAUGCAUUUUAUUUCGUUGAGCUUUAUUAGCUGACAUCUGCAGAACUGAAGCUAUCCU___CAAAGCU_____UUUAUCUCCGCCACACAC____ .(((((((((...)))))))))............((((((....(((.(....))))...))))))........................................... (-14.90 = -15.54 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:39 2011