| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,399,855 – 23,399,949 |
| Length | 94 |
| Max. P | 0.732789 |
| Location | 23,399,855 – 23,399,949 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Shannon entropy | 0.36483 |
| G+C content | 0.52024 |
| Mean single sequence MFE | -35.78 |
| Consensus MFE | -24.46 |
| Energy contribution | -24.22 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23399855 94 + 27905053 ------------UCCC-GCAGGCGGAAG-------GAGGAGUUG-----CUUCUUCGCCAGAAGACAAAGUUGGCAACUCGAUUGAAAAAGUUGCUGGCCAAGUUGAAUGGCAGGCAAA ------------....-((.....((((-------(((......-----)))))))((((...(((...((..((((((..........))))))..))...)))...))))..))... ( -32.00, z-score = -1.37, R) >droSim1.chr3R 23130993 99 + 27517382 ------------ACGC-GCAGGCGGAAG-------AAGGAGUAGUUCUUCUUCUUGGCCAGAAGACAAAGUUGGCAACUCGAUGGCAAAAGUUGCUGGCCAAGUUGAAUGGCAGGCAAA ------------.(((-....))).(((-------((((((.....))))))))).((((...(((...((..((((((..........))))))..))...)))...))))....... ( -34.60, z-score = -1.78, R) >droSec1.super_22 33515 96 + 1066717 ------------ACCA-GCAGGCGGAAG-------AAGGAGUAGUUCUUCUUCUUGGCCAGAAGACAAAGUUGGCAACUCGAUGGCA---GUUGCUGGCCAAGUUGAAUGGCAGGCAAA ------------....-((....(((((-------(((((....))))))))))..((((...(((...((..(((((((....).)---)))))..))...)))...))))..))... ( -34.70, z-score = -1.79, R) >droYak2.chr3R 5743485 118 - 28832112 UCCCGCAGGCGAACAACGGAGGCGGGAGCGGAAAGUAGGAGCAUCU-UGCGCUUGGGCCAGAAGACAAAGUUGGCAACUCGAUUGAAAAAGUUGCUGGCCAAGUUGAAUGGCAGGCAAA ((((((...((.....))...)))))).......(((((.....))-)))(((...((((...(((...((..((((((..........))))))..))...)))...)))).)))... ( -41.40, z-score = -1.67, R) >droEre2.scaffold_4820 5831867 107 - 10470090 UCCCGCAGGCGAAC---GGAGGCGGCAG-------UAGGAGAAUCU-UGCGCUUGG-CCAGAAGACAAAGUUGGCAACUCGAUUGAAAAAGUUGCUGGCCAAGUUGAAUGGCAGGCAAA ..((((...(....---.)..))))..(-------((((.....))-)))(((((.-(((...(((...((..((((((..........))))))..))...)))...))))))))... ( -36.20, z-score = -1.03, R) >consensus ____________ACCA_GCAGGCGGAAG_______AAGGAGUAGCU_UGCUUCUUGGCCAGAAGACAAAGUUGGCAACUCGAUUGAAAAAGUUGCUGGCCAAGUUGAAUGGCAGGCAAA .....................((............((((((........)))))).((((...(((...((..((((((..........))))))..))...)))...))))..))... (-24.46 = -24.22 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:38 2011