| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,812,315 – 8,812,417 |
| Length | 102 |
| Max. P | 0.910619 |
| Location | 8,812,315 – 8,812,417 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.09 |
| Shannon entropy | 0.53248 |
| G+C content | 0.36022 |
| Mean single sequence MFE | -20.24 |
| Consensus MFE | -13.76 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8812315 102 + 23011544 ----GUUUUCUUAUU----UUUUUUUUGUUGUAUCUGGG-CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAA-- ----...........----..................((-((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..-- ( -22.10, z-score = -1.05, R) >droSim1.chr2L 8590631 101 + 22036055 ----GUUUUCUUAUU----UUUUUUU-GUUGUAUCUGGG-CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAA-- ----...........----.......-..........((-((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..-- ( -22.10, z-score = -1.08, R) >droSec1.super_3 4284494 102 + 7220098 ----GUUUUCUUAUU----UUUUUUUUGUUGUAUCUGGG-CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAUCCUUGAUUUAUGCCAA-- ----...........----..................((-((.(((((((((((((((((..((..(((......))).))..))))))))).....))))))))))))..-- ( -20.30, z-score = -0.87, R) >droYak2.chr2L 11457303 100 + 22324452 ------UUCAUUAUU----UUUUUUUUUUUGUAUCUGGG-CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAA-- ------.........----..................((-((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..-- ( -22.10, z-score = -1.36, R) >droEre2.scaffold_4929 9403987 110 + 26641161 AUCCCCAUUCCCAUUCCAAUUUUUUUUCUUGUAUCUGGG-CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAA-- .....................................((-((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..-- ( -22.10, z-score = -1.00, R) >droAna3.scaffold_12916 10474856 100 + 16180835 ------UUCGUCGUU----UCCCCCCCUUUGUAUCUGGG-CAGUAAAUUAAGCGUAAACUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCUUUGAUUUAUGCGAA-- ------....((((.----.....(((.........)))-..(((((((((((........((........))..(((((((....))))))).)).))))))))))))).-- ( -19.50, z-score = 0.20, R) >dp4.chr4_group5 1603840 81 - 2436548 ----------------------------UCUCAUCCAG--CAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGA-- ----------------------------.....(((.(--((.((((((((((((((((((((...(((......)))))))..)))))))).....))))))))))))))-- ( -19.50, z-score = -3.05, R) >droPer1.super_5 1573577 81 - 6813705 ----------------------------UCUCAUCCAG--CAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGA-- ----------------------------.....(((.(--((.((((((((((((((((((((...(((......)))))))..)))))))).....))))))))))))))-- ( -19.50, z-score = -3.05, R) >droWil1.scaffold_180772 124546 88 + 8906247 -----------------------UCAGAUCAAGUCAGGGGCAGUAAAUUAAGCGUGAAAUCAUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGAA-- -----------------------.......(((((((((............((.((............)).))..(((((((....)))))))..))))))))).......-- ( -17.30, z-score = -0.52, R) >droVir3.scaffold_12723 4806247 103 + 5802038 ------CCUGUCUCUUUC---UCUCAGUAUG-UAUCAAGACAGUAAAUUAAGCGUGGAAUCAUAAAACCUGGCAAGGUGUGAAAUUUUAUGCCAGCAUUGAUUUAUGCCCAAA ------.((((((.....---.(.......)-.....))))))........(((((.(((((......((((((((((.....))))..))))))...))))))))))..... ( -20.60, z-score = -0.56, R) >droMoj3.scaffold_6500 10778384 107 + 32352404 ------CCCGUCUCUUCCACACCUCUGUCCACUCUAAAGACUGUAAAUUAAGCGUGGAAUCGUAAAAGCUGGCAAGGUGUGAAAUUUUAUGCCAACAUUGAUUUAUGCACAAA ------...........(((((((...(((((.((.((.........)).)).)))))...((........)).)))))))(((((..(((....))).)))))......... ( -17.50, z-score = 0.60, R) >consensus ______UUUCUCAUU____UUUUUUUUUUUGUAUCUGGG_CAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAA__ ..........................................((((((((((((((((((......(((......))).....))))))))).....)))))))))....... (-13.76 = -13.60 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:01 2011