| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,378,190 – 23,378,248 |
| Length | 58 |
| Max. P | 0.568692 |
| Location | 23,378,190 – 23,378,248 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 69.62 |
| Shannon entropy | 0.61600 |
| G+C content | 0.40367 |
| Mean single sequence MFE | -9.65 |
| Consensus MFE | -5.77 |
| Energy contribution | -5.81 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.37 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23378190 58 - 27905053 GCGGAGCAUGAAGCACUGCUCUAGAAAGUAAAAUCACACAUGGAAAAAACUCUUUCAU--- ..((((((........)))))).(((((........(....).........)))))..--- ( -9.93, z-score = -0.99, R) >droAna3.scaffold_13340 4386583 55 + 23697760 GCGGAGCAUGAAGCGCUGCUCUAGAAAGUAAAACCACUGUGGGG-GAAAAGCAGUG----- ((((.((.....)).))))...............((((((....-.....))))))----- ( -13.20, z-score = -0.29, R) >droEre2.scaffold_4820 5808858 61 + 10470090 GCGGAGCAUGAAGCACUGCUCUAGAAAGUAAAAUCACACUAGGGAAAAAAACAUUUGGUAU ((((.((.....)).))))(((((...((......)).))))).................. ( -8.80, z-score = -0.38, R) >droYak2.chr3R 5720779 60 + 28832112 GCGGAGCAUGAAGCACUGCUCUGGAAAGUAAAAUCUCACUAGAG-GAAAAGCAUUUGGUUU .(((((((........)))))))....((....((((....)))-)....))......... ( -12.30, z-score = -0.11, R) >droSec1.super_22 11963 56 - 1066717 GCGGAGCAUGAAGCACUGCUCUAGAAAGU--AAUCACACUAGGAAAAAACUCUUUCAA--- ..((((((........)))))).(((((.--....................)))))..--- ( -9.70, z-score = -0.60, R) >droSim1.chr3R 23109351 58 - 27517382 GCGGAGCAUGAAGCACUGCUCUAGAAAGUAAAAUCACACUAGGAAAAAACUCUUUCAU--- ..((((((........)))))).(((((.....((.......)).......)))))..--- ( -9.70, z-score = -0.84, R) >apiMel3.Group5 6717480 56 + 13386189 UCUGAGGAU-AUUUUUUAUUUUAAAUCGUCAAA--GAAACACGUAAAAGACUAUUGCAU-- (((...(((-((((........)))).)))..)--)).....((((.......))))..-- ( -3.90, z-score = 0.64, R) >consensus GCGGAGCAUGAAGCACUGCUCUAGAAAGUAAAAUCACACUAGGAAAAAAAUCAUUCAA___ ..((((((........))))))....................................... ( -5.77 = -5.81 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:25 2011