| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,344,919 – 23,345,034 |
| Length | 115 |
| Max. P | 0.524204 |
| Location | 23,344,919 – 23,345,034 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.78 |
| Shannon entropy | 0.35370 |
| G+C content | 0.44789 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -17.33 |
| Energy contribution | -17.12 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23344919 115 - 27905053 -UUUAGUCGCCUUCCUUGACCUUCGCAAAGCGACAAAAUGAACUGGUUGCCAAGCGACCUCAACCACGGACAAUUUCGUCCUUGUCGCUACCAAUUUGGUUAACUAAAAUACGCGU- -....((((.......))))...(((..((((((((..(((...((((((...))))))))).....((((......)))))))))))).....(((((....)))))....))).- ( -31.60, z-score = -3.02, R) >droSim1.chr3R 23082795 115 - 27517382 -UUUAGUCGCCUUCCUUGACCUUCGCAAAGAGACAAAAUAAACUGGUUGCCAAGCGACCUGAACCACGGACAAUUUCGUCCUUGUCGCUACCAAUUCGGUUAACUGAAAUACGCGU- -....((((.......))))...(((..((.(((((........((((((...))))))........((((......))))))))).)).....(((((....)))))....))).- ( -27.60, z-score = -1.49, R) >droSec1.super_13 2088183 115 - 2104621 -CUUAGUCGCCUUCCUUGACCUUCGCAACGAGACAAAAUAAACUGGUUGCCAAGCGACCUGAACCACGGACAAUUUCGUCCUUGUCGCUACCAAUUCGGUUAACUGAAAUACGCGU- -......(((.(((.((((((...(((((.((..........)).)))))..((((((..(.....)((((......))))..))))))........))))))..)))....))).- ( -27.70, z-score = -1.52, R) >droYak2.chr3R 5694928 115 + 28832112 -UUCAGUCGCCUUCCUUGACCUACGCAAAAUGGCAAAAUAAACUGGUUGCCAAGCGACCUGAACCACGGACAAUUUAUUCCUUGUCGCUACCAAUUCGGUUAACUGAAAUACGCGA- -....((((.......))))...(((....((((..........((((((...)))))).........(((((........)))))))))....(((((....)))))....))).- ( -25.10, z-score = -1.18, R) >droEre2.scaffold_4820 5783977 107 + 10470090 -UUUAGUCGCCUUCCUUGACCU--------UCGCAAAAUAAACUGGUUGCCAAGCGACCUGAACCACGGACAAUUUCUUCCAUGUCGCUACCAAUUCGGUUAACUGAAAUACGCGU- -....((((.......))))..--------.(((.........((((.....((((((..(.....)(((........)))..)))))))))).(((((....)))))....))).- ( -20.10, z-score = -0.27, R) >droAna3.scaffold_13340 4365716 114 + 23697760 UCUUAGACGAUGUCCUUGGGCUUC-UACGGGAACAAAAUAAACUUGUUGCCAAGCGACAAAAGCUAAGGUCAAAU--GCCUUUGUCACUUUCAAUUCGUUUUAGUAAAAUGUUUUAG .((.((((((.(((....)))...-...((.(((((.......))))).))(((.((((((.((...........--)).)))))).))).....)))))).))............. ( -24.20, z-score = -0.82, R) >consensus _UUUAGUCGCCUUCCUUGACCUUCGCAAAGAGACAAAAUAAACUGGUUGCCAAGCGACCUGAACCACGGACAAUUUCGUCCUUGUCGCUACCAAUUCGGUUAACUGAAAUACGCGU_ .......(((.....................(((((........((((((...))))))........((((......)))))))))........(((((....)))))....))).. (-17.33 = -17.12 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:24 2011