| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,337,619 – 23,337,703 |
| Length | 84 |
| Max. P | 0.726191 |
| Location | 23,337,619 – 23,337,703 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 90.49 |
| Shannon entropy | 0.16430 |
| G+C content | 0.54206 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -21.94 |
| Energy contribution | -23.18 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23337619 84 + 27905053 GCCGCUGGCAACGGCCUCUCAAUUGCCAGCAAA-GUUGGACAAACACAGCGACCCAUAAUACACAUGCUGGCUGGCUGGCUGGCU (((((((....)))).........((((((...-(((.....))).((((.(..(((.......))).).)))))))))).))). ( -30.40, z-score = -1.38, R) >droEre2.scaffold_4820 5776843 72 - 10470090 GACGUUGGCAACGGCCUCUCAAUUGCCAGCAAA-GUUGGACAAACACAGCGAGCCAUAAUACACAUGCUGGCU------------ ((.((((....)))).))......(((((((..-((((........))))..(........)...))))))).------------ ( -21.10, z-score = -1.59, R) >droYak2.chr3R 5687041 80 - 28832112 GCCGCUGGCAACGGCCUCUCAAUUGCCAGCAAAAGUUGGACAAACACAGCGACCUAUAAUACACAUGCUG-CUGGCUGGCU---- (((((((....)))).........(((((((...((((........))))...........(....).))-))))).))).---- ( -26.70, z-score = -1.85, R) >droSec1.super_13 2080896 80 + 2104621 GCCGCUGGCAACGGCCUCUCAAUUGCCAGCAAA-GUUGGACAAACACAGCGACCUAUAAUACACAUGCUGGCUGGCUGGCU---- (((((((....)))).........((((((...-(((.....))).(((((..............))))))))))).))).---- ( -29.44, z-score = -2.38, R) >droSim1.chr3R 23075122 80 + 27517382 GCCGCUGGCAACGGCCUUUCAAUUGCCAGCAAA-GUUGGACAAACACAGCGACCUAUAAUACACAUGCUGGCUGGCUGGCU---- (((((((....)))).........((((((...-(((.....))).(((((..............))))))))))).))).---- ( -29.44, z-score = -2.38, R) >consensus GCCGCUGGCAACGGCCUCUCAAUUGCCAGCAAA_GUUGGACAAACACAGCGACCUAUAAUACACAUGCUGGCUGGCUGGCU____ (((((((....)))).........((((((....(((.....))).(((((..............))))))))))).)))..... (-21.94 = -23.18 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:22 2011