| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,335,614 – 23,335,732 |
| Length | 118 |
| Max. P | 0.606284 |
| Location | 23,335,614 – 23,335,732 |
|---|---|
| Length | 118 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.36 |
| Shannon entropy | 0.52158 |
| G+C content | 0.41934 |
| Mean single sequence MFE | -32.41 |
| Consensus MFE | -10.49 |
| Energy contribution | -10.01 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23335614 118 + 27905053 CCGCUC-GUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAUAUGAUAUAGUUUGCCAAGCCAGAUUAUUAAUGUAGCUAUGCUGAAAGCCAGUAAUGGCAAGCACUUCCCCU-UCAGAUUA ..((((-....))))((...(..(((((..(((((((((((...))))).))))))(((.(.((.....)).).)))..(((....((((....)))).))))))))..).-..)).... ( -33.00, z-score = -2.01, R) >droPer1.super_0 2807895 101 + 11822988 CUGCUC-GUAAGAGCCUUAUGAUGGAGUAAUUUUAACUAUAUGAUCUGGUUUGCCAU-CCAGACGAAUACGAUCCCAUUAAUGGGCUUAUUGGGUGUCCGUCA----------------- ..((((-....))))....(((((((..................(((((........-)))))(.((((....((((....))))..)))).)...)))))))----------------- ( -27.90, z-score = -1.45, R) >dp4.chr2 8995074 101 + 30794189 CUGCUC-GUAAGAGCCUUAUGAUGGAGUAAUUUUAACUAUAUGAUCUGGUUUGCCAU-CCAGACGAACACGAUUCCAUUAAUGGGCUUAUUGGGUGUCCGUCA----------------- ..((((-(...((((((..(((((((((................(((((........-)))))((....)))))))))))..))))))..)))))........----------------- ( -29.00, z-score = -1.85, R) >droAna3.scaffold_13340 4356572 118 - 23697760 UUGCCAAGUAAGAGCCUUAUGUUGGAGUAAUGGCAACUAUAUGAAAUAGUUUGCCAAGCCAGAUUAUAAAUAUAGCA--GUCGGAAGCUGCUGAAGCUAAGCUCUACCUUUAUGAGAUUA .....(((..(((((.(((((((((.....((((((((((.....)))).))))))..))))..)))))...(((((--(.(....))))))).......)))))..))).......... ( -31.50, z-score = -1.58, R) >droEre2.scaffold_4820 5774798 118 - 10470090 CCGCUC-GUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAUAUGAUAUAGUUUGCCAAGGCAGAUUAUUAAUGUAGCUAUGCUGAAAGCCAGUAAUGGCAAGCUCUUCCCCU-CCAGAUUA ..((((-....)))).....(((((((....((((.((((((...(((((((((....)))))))))..))))))...))))....((((....))))...........))-)).))).. ( -40.30, z-score = -3.73, R) >droYak2.chr3R 5684987 119 - 28832112 CCACUCCGUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAUAUGAUAUAGUUUGCCAAGCCAGAUUAUUAAUGUAGCUAUGCUGAAAGCCAGUAAUGGCCAGCUCUUCCCCU-UCAGUUUA ..((((((((((...))))...))))))..(((((((((((...))))).))))))(((.(.((.....)).).)))..((((...((((....)))))))).........-........ ( -30.70, z-score = -1.57, R) >droSec1.super_13 2078888 116 + 2104621 CCGCUC-GUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAU--CAUAUAGUUUGCCAAGCCAGAUUAUUAAUGUAACUUUGCUAAAAGCCAGUAAUGGCAAGCACUUCCUUU-CCAGAUUA ..((((-....)))).....(((((((...((((((((((--...)))).)))))).((((((((((....)))).))))......((((....))))..)).......))-)).))).. ( -31.10, z-score = -2.37, R) >droSim1.chr3R 23073106 118 + 27517382 CCGCUC-GUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAUAUGAUAUAGUUUGCCAAGCCAGAUUAUUAAUGUAGCUAUGCUGAAAGCCAGUAAUGGCAAGCACUUCCCCU-CCAGAUUA ..((((-....)))).....(((((((...(((((((((((...))))).))))))(((.(.((.....)).).))).((((....((((....)))).))))......))-)).))).. ( -35.80, z-score = -2.94, R) >consensus CCGCUC_GUAAGAGCCUUAUGUCGGAGUAAUGGCAACUAUAUGAUAUAGUUUGCCAAGCCAGAUUAUUAAUGUAGCUAUGCUGAAAGCCAGUAAUGGCAAGCACUUCCCCU_CCAGAUUA ..((((.....)))).....(((((.....((((((((((.....)))).))))))..))...................((.....)).......)))...................... (-10.49 = -10.01 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:20 2011