| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,321,439 – 23,321,545 |
| Length | 106 |
| Max. P | 0.761198 |
| Location | 23,321,439 – 23,321,545 |
|---|---|
| Length | 106 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.44 |
| Shannon entropy | 0.48107 |
| G+C content | 0.38469 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -11.28 |
| Energy contribution | -12.15 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23321439 106 + 27905053 ---------GGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGAAACUAAUUUGAUAACA-AAUUCAAUUUGAGAAUA--CCCAAACUCUAGACAUUGCCCAAAUGCAUUUGCGCCCAA ---------(((((((((((((((.....)))))))))))))...((...((((.....-...))))....))....--.))..............((.((((....)))).)).... ( -21.20, z-score = -1.94, R) >droSim1.chr3R 23058998 106 + 27517382 ---------GGCAUCAAAAUGCCGCCUUAUGGUAAUUUGAUGAAACUAAUUUGAUAACA-AAUUCAAUUUGAGAGUA--CCCAAACUCCAGACGUUGCCCAAAUGCAUUUGCGCCCAA ---------(((....((((((.(((....))).(((((....(((.((((((....))-))))...((((.((((.--.....)))))))).)))...)))))))))))..)))... ( -22.20, z-score = -1.60, R) >droSec1.super_13 2064841 106 + 2104621 ---------GGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGAAACUAAUUUGAUAACA-AAUUCAAUUUGAGAGUA--CCCAAACUCCAGACGUUGGCCAAAUGCAUUUGCGCCCAA ---------..(((((((((((((.....))))))))))))).(((.((((((....))-))))...((((.((((.--.....)))))))).)))(((((((....)))).)))... ( -28.40, z-score = -2.98, R) >droYak2.chr3R 5670077 106 - 28832112 ---------GGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGAAACUAAUUUGAUAACA-AAUUCAAUUUGAGAGUA--CCCAAACUCUAGACGUUGGCCAAAUGCAUUUGGGCCCAA ---------..(((((((((((((.....))))))))))))).((((((.((((.....-...)))).)))(((((.--.....)))))....)))((((.((.....)).))))... ( -28.60, z-score = -2.55, R) >droEre2.scaffold_4820 5760493 106 - 10470090 ---------GGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGAAACUAAUUUGAUAACA-AAUUCAAUUUGAGAGCA--CCCAAACUCCAGACGUUGGCCAAAUGCAUUUGGGCCCAA ---------..(((((((((((((.....))))))))))))).(((.((((((....))-))))...((((.(((..--......))))))).)))((((.((.....)).))))... ( -27.10, z-score = -1.65, R) >droAna3.scaffold_13340 4341686 106 - 23697760 ---------AGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGCAACUAAUUUGAUAACA-AAUUCAAUUUCAAAGUG--ACAAAACUGUAGACGUUGGCCAAAUGCAUUUGCGCCCAA ---------.((((((((((((((.....))))))))))))))....((((((....))-)))).(((.((..(((.--.....)))...)).)))(((((((....)))).)))... ( -28.20, z-score = -2.83, R) >dp4.chr2 8980528 115 + 30794189 GGUAGUGGCAUCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGCAACUAAUUUGAUAACA-AAUUCAAUUUCAAAGUA--CCAGAACUGUGGACGAACCCCAAAUGCACAAAUGCUCGU ((((.(((...(((((((((((((.....)))))))))))))...)))..((((.....-...))))........))--)).((....(((.......)))...(((....))))).. ( -24.20, z-score = -0.64, R) >droPer1.super_0 2793761 115 + 11822988 GGUGGUGGCAUCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGCAACUAAUUUGAUAACA-AAUUCAAUUUCAAAGUG--CCAGAACUGUAGACGAACCCCAAAUGCACAAAUGCUCGU (((..(((((((((((((((((((.....))))))))))))).....((((((....))-))))..........)))--)))..)))....((((.........(((....))))))) ( -28.60, z-score = -1.59, R) >droWil1.scaffold_181089 3562995 87 + 12369635 ---------------CUUUUGUCGCCUAAUGGUAAUUUGAUGCAACUAAUUUGAUAACAGAAUUCAAUUUGAAAUUUGCCCAAAACUCUGUGCAUCUGCCUU---------------- ---------------........(((....))).....((((((.....((((....((((.(((.....))).))))..))))......))))))......---------------- ( -14.30, z-score = -1.09, R) >droMoj3.scaffold_6540 13803635 100 + 34148556 -------GCAACAGCUAUUUGCGUCCCAAUUUCAGUUUGAUGUAACUAAUUUGAUAACA-AAUUCAAUUUCAAAGUG--CCAAAUCUGCAGUUG--GGGCUAAUGCAGCUGC------ -------....(((((..(((.(((((((((.(((((((..(((......((((.....-...))))........))--))))).))).)))))--)))))))...))))).------ ( -26.94, z-score = -1.89, R) >consensus _________GGCAUCAAAUUGCCGCCUAAUGGUAAUUUGAUGAAACUAAUUUGAUAACA_AAUUCAAUUUGAAAGUA__CCAAAACUCUAGACGUUGGCCAAAUGCAUUUGCGCCCAA ...........(((((((((((((.....)))))))))))))........((((.........))))................................................... (-11.28 = -12.15 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:13 2011