| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,318,870 – 23,318,961 |
| Length | 91 |
| Max. P | 0.982594 |
| Location | 23,318,870 – 23,318,961 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 60.63 |
| Shannon entropy | 0.71255 |
| G+C content | 0.52560 |
| Mean single sequence MFE | -33.63 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.36 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23318870 91 + 27905053 UGACUGGAUUGGUUUCGGAUCCUUGCUUUGGGAUCCGGCGUCCGAUGUCCGGAGUCC-------CUUCCAUCCGGAU--UGCCAUAAAUUAUGAGAAGGC---- ...(((((((((..(((((((((......)))))))))...)))..))))))....(-------(((((((...(((--(......))))))).))))).---- ( -31.90, z-score = -1.04, R) >droAna3.scaffold_13340 4339282 80 - 23697760 ---------------UAGAUUCGUUUCUUGGGAUCGCCCCCAAGCAUGUCGCAGCCU-------CGUCCUUCCGGAU--CGCCAUAAAUUAUGAAACGAAUGGC ---------------...((((((((((((((......)))))((.....)).((..-------.((((....))))--.))..........)))))))))... ( -21.20, z-score = -0.77, R) >droYak2.chr3R 5667492 96 - 28832112 UGACUGGAUUGGUUUCGGAUCCUUGCCUUGGGAUCCGGAUUCCGUAUUCCGGAGUCCAGAGACCCUUCCAUCCGGAU--UGCCAUAAAUUAUGAGGAG------ ....((((..(((((((((((((......)))))))((((((((.....)))))))).))))))..))))(((.(((--(......))))....))).------ ( -43.10, z-score = -4.04, R) >droSec1.super_13 2062337 98 + 2104621 UGACUGGAUUGGUUUCGGAUCCUUGCUUUGGGAUCCGGCGUCCGAAGUCCGGAGUCCGGAGUCCCUUCCAUCCGGAU--UGCCAUAAAUUAUGAGAAGGC---- ...(((((((((..(((((((((......)))))))))...)))..))))))((((((((..........)))))))--)(((..............)))---- ( -37.04, z-score = -1.42, R) >droSim1.chr3R 23056457 98 + 27517382 UGACUGGAUUGGUCUCGGAUCCUUGCUUUGGGAUCCGGCGUCCGAAGUCCGGAGUCCGGAGUCCCUUCCAUCCGGAU--UGCCAUAAAUUAUGAGAAGGC---- ...(((((((((.((((((((((......))))))))).).)))..))))))((((((((..........)))))))--)(((..............)))---- ( -38.34, z-score = -1.58, R) >droMoj3.scaffold_6540 13799637 88 + 34148556 ------------UGAUGUCUUAGCUGAGCCGAGCCGGGCCGUGCCGUGCUGCCGCCGGCUUAGCUACCCUUUCAGUUGAUGUCAUAAAUUAUAAACAAAA---- ------------(((((((.(((((((((((.((..(((.((.....)).))))))))))))))))...........)))))))................---- ( -30.20, z-score = -2.68, R) >consensus UGACUGGAUUGGUUUCGGAUCCUUGCUUUGGGAUCCGGCGUCCGAAGUCCGGAGUCCGGAG_CCCUUCCAUCCGGAU__UGCCAUAAAUUAUGAGAAGGC____ ...............((((((((......))))))))..........((((((.................))))))............................ (-13.00 = -13.36 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:12 2011