| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,317,943 – 23,317,996 |
| Length | 53 |
| Max. P | 0.692363 |
| Location | 23,317,943 – 23,317,996 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 91.51 |
| Shannon entropy | 0.13776 |
| G+C content | 0.49528 |
| Mean single sequence MFE | -15.03 |
| Consensus MFE | -12.94 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23317943 53 + 27905053 CGGUCAUUUUGCCGGGAGUCUUAGUUUGAGUUUGAGUUUCAGUUCGAGCUCAA ((((......))))...........(((((((((((......))))))))))) ( -15.10, z-score = -2.29, R) >droEre2.scaffold_4820 5757215 53 - 10470090 CGGACAUUCUGCCGGGGGUCUCGGUUUGAGUUUGAGUUCCAGUUUGAGCUCAA .....((((.((((((...))))))..))))((((((((......)))))))) ( -16.50, z-score = -1.10, R) >droSec1.super_13 2061383 53 + 2104621 CGGUCAUUUUGCCGGGGGUCACAGUUUGAGUUUGAGUUUCAGUUCGAGCUCAA ((((......))))...........(((((((((((......))))))))))) ( -15.10, z-score = -2.21, R) >droSim1.chr3R 23055492 53 + 27517382 CGGUCAUUUUGCCGGGGGUCUCAGUUUGAGUUGGAGUUUCAGUUCGAGCUCAA ((((......))))...........(((((((.(((......))).))))))) ( -13.40, z-score = -1.01, R) >consensus CGGUCAUUUUGCCGGGGGUCUCAGUUUGAGUUUGAGUUUCAGUUCGAGCUCAA (((........)))...........(((((((((((......))))))))))) (-12.94 = -13.00 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:12 2011