| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,312,869 – 23,312,959 |
| Length | 90 |
| Max. P | 0.643853 |
| Location | 23,312,869 – 23,312,959 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Shannon entropy | 0.38865 |
| G+C content | 0.41230 |
| Mean single sequence MFE | -18.63 |
| Consensus MFE | -12.97 |
| Energy contribution | -12.70 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643853 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23312869 90 + 27905053 -UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCC-----------AGACCAGAGGCUUCA----- -((((((((.(((.....))).....((((....))))............))))))))...(((((..(((....)-----------))....)))))....----- ( -18.90, z-score = -1.51, R) >droSim1.chr3R 23050448 90 + 27517382 -UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCC-----------AGACCAGAGGCCUCA----- -((((((((.(((.....))).....((((....))))............))))))))...(((((..(((....)-----------))....)))))....----- ( -18.50, z-score = -1.35, R) >droSec1.super_13 2056402 90 + 2104621 -UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCC-----------AGACCAGAGGCCUCA----- -((((((((.(((.....))).....((((....))))............))))))))...(((((..(((....)-----------))....)))))....----- ( -18.50, z-score = -1.35, R) >droYak2.chr3R 5661379 101 - 28832112 -UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCCCAGACCAAACCAGACCAGAGGCCUCA----- -((((((((.(((.....))).....((((....))))............))))))))...(((((..(((.....)))..(......)....)))))....----- ( -17.60, z-score = -0.73, R) >droEre2.scaffold_4820 5752205 91 - 10470090 -UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCCC----------AGACCAGAGGCCUCA----- -((((((((.(((.....))).....((((....))))............))))))))...(((((..(((.....)----------))....)))))....----- ( -18.50, z-score = -1.33, R) >droAna3.scaffold_13340 4332191 92 - 23697760 -UGUGUGGCCACAAUUUCGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUCCAAUUGAACCC-----------AGACCAGAGACUUCUUU--- -((((((((..........(((((.............)))))........))))))))....(((...(((....)-----------))....)))........--- ( -14.59, z-score = -0.95, R) >dp4.chr2 8972927 90 + 30794189 -UGUGUGGCCACAAUUU-GGUAUACAAAUUACGAAAUUAUACAAAUCAACGCCGAACAAUUGCUUCAAUUGAACCCA----------GGCCCAGACGCAGAA----- -(((((((((..(((((-.(((.......))).)))))..................((((((...))))))......----------))))...)))))...----- ( -19.10, z-score = -1.46, R) >droPer1.super_0 2786171 90 + 11822988 -UGUGUGGCCACAAUUU-GGUAUACAAAUUACGAAAUUAUACAAAUCAACGCCGAACAAUUGCUUCAAUUGAACCCA----------GGCCCAGACGCAGAA----- -(((((((((..(((((-.(((.......))).)))))..................((((((...))))))......----------))))...)))))...----- ( -19.10, z-score = -1.46, R) >droWil1.scaffold_181089 3553755 81 + 12369635 -UGUGUGGCCACAAUUU-GGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCACACAAUUGCUUCAAUUGAACCC-----------AGACCCG------------- -((((((((....((((-(.((((.............)))))))))....))))))))..................-----------.......------------- ( -15.22, z-score = -1.91, R) >droVir3.scaffold_13047 1304388 100 - 19223366 -UGUGUGGCUAC-GUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCACACAAUUGCUUCAAUUUAGCCAAGG----CUCGCAACCUGGCCCAAGCCUCC- -((((((((...-..((((.((((.............)))))))).....))))))))...(((.......)))..(((----((.((......))...)))))..- ( -22.62, z-score = -1.41, R) >droMoj3.scaffold_6540 13789611 98 + 34148556 -UGUGUGGCUAC-GUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCACACAAUUGCUUCAAUUUAACCGAGGGG--CCACCGUCCUGGGCCAACU----- -((((((((...-..((((.((((.............)))))))).....))))))))....((((.........))))((--((.........))))....----- ( -23.02, z-score = -0.80, R) >droGri2.scaffold_15074 6719237 103 + 7742996 GUGUGUGGCUAC-AUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGUCACACAAUUGCUUCAAUUUAACCCAGACC---ACCUACCCCGCCGCCAGGCAGCU .((((((((...-..((((.((((.............)))))))).....))))))))...(((............((...---..)).....(((....)))))). ( -17.92, z-score = -0.58, R) >consensus _UGUGUGGCCACCAUUUUGGUAUACAAAUUACAAAAUUAUACAAAUCAACGCCGCACAAUUGCUUCAAUUGAACCC___________AGACCAGAGGCCUCA_____ .((((((((....(((...(((((.............))))).)))....))))))))................................................. (-12.97 = -12.70 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:11 2011