| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,310,727 – 23,310,795 |
| Length | 68 |
| Max. P | 0.793144 |
| Location | 23,310,727 – 23,310,795 |
|---|---|
| Length | 68 |
| Sequences | 8 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Shannon entropy | 0.50335 |
| G+C content | 0.51090 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -12.87 |
| Energy contribution | -12.62 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23310727 68 - 27905053 UGCGCUUUUUAUUCCGCCAUUUGGCUGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGUAAAUGUGGCG ((((((......((.((((((..(....)..)))))).)).)))))).....((((.......)))). ( -25.90, z-score = -1.69, R) >droSim1.chr3R 23048220 68 - 27517382 UGCGCUUUUUAUUUCGCCAUUUGGCUGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGUAAAUGUGGCG ((((((.(((.....((((((..(....)..))))))))).)))))).....((((.......)))). ( -25.70, z-score = -1.95, R) >droSec1.super_13 2054171 68 - 2104621 UGCGUUUUUUAUUUUGCCAUUUGGCUGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGUAAAUGUGGCG ((((((......(((((((((..(....)..))))))))).)))))).....((((.......)))). ( -25.50, z-score = -2.39, R) >droYak2.chr3R 5659054 64 + 28832112 GGCGCUUUUUAUUUUGCCAUU----UGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGUAAAUGUGGCG .(((((......(((((((((----(....)))))))))).)))))......((((.......)))). ( -22.50, z-score = -1.78, R) >droEre2.scaffold_4820 5749963 64 + 10470090 UGCGCUUUUUAUUUCGCCAUU----UGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGCAAAUGUGGCG ((((((.(((.....((((((----(....)))))))))).)))))).....((((.(....))))). ( -21.30, z-score = -0.97, R) >droAna3.scaffold_13340 4329975 61 + 23697760 UUUGGGUUUCAUUCCGUUGUU-------UUGGCCGCCAGACGUCGCAAUUAGGCCAGCAAAUGUGGCG ...(((......)))((..(.-------((((((.................)))))).....)..)). ( -12.33, z-score = 1.31, R) >droPer1.super_0 2784129 57 - 11822988 -----------UUUGGUUUUUAUGUUGGCCAACUGGCAGACGGCGCAAUUAGGCCGUCAAAUGUGGCG -----------........(((((((.(((....))).((((((........)))))).))))))).. ( -17.20, z-score = -0.93, R) >dp4.chr2 8970879 57 - 30794189 -----------UUUGGUUUUUAUGUUGGCCAACUGGCAGACGGCGCAAUUAGGCCGUCAAAUGUGGCG -----------........(((((((.(((....))).((((((........)))))).))))))).. ( -17.20, z-score = -0.93, R) >consensus UGCGCUUUUUAUUUCGCCAUU__G_UGGCUGGAUGGCAGACAGCGCAAUUAGGCCAGCAAAUGUGGCG ...............(((((.....(((((.....((.......)).....)))))......))))). (-12.87 = -12.62 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:10 2011