| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,285,205 – 23,285,307 |
| Length | 102 |
| Max. P | 0.917206 |
| Location | 23,285,205 – 23,285,307 |
|---|---|
| Length | 102 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Shannon entropy | 0.40357 |
| G+C content | 0.38033 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -17.02 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23285205 102 - 27905053 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUCCCUUCUUUUUUUUUUUUUUUUU------------ ((((..((((((((.((.((((....))))...))(((--.......))).)))))))))))).........................................------------ ( -21.30, z-score = -1.95, R) >droSim1.chr3R 23021864 104 - 27517382 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUCCCUUCCUUUUUUUAUUUUUUUUUU---------- ((((..((((((((.((.((((....))))...))(((--.......))).))))))))))))...........................................---------- ( -21.30, z-score = -1.97, R) >droSec1.super_13 2028860 104 - 2104621 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUCCCUUCCUUUUUUUAUUUUUUUUUU---------- ((((..((((((((.((.((((....))))...))(((--.......))).))))))))))))...........................................---------- ( -21.30, z-score = -1.97, R) >droYak2.chr3R 5625405 100 + 28832112 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUUCCUUUUUCUUUUUUUUUCUC-------------- ((((..((((((((.((.((((....))))...))(((--.......))).)))))))))))).......................................-------------- ( -21.30, z-score = -2.06, R) >droEre2.scaffold_4820 5723925 89 + 10470090 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUCCCUUUUUUU------------------------- ((((..((((((((.((.((((....))))...))(((--.......))).))))))))))))............................------------------------- ( -21.30, z-score = -1.86, R) >droAna3.scaffold_13340 4305757 88 + 23697760 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGGCAGUGACAGUAACAUGACAUCUCCUUUUAUUUUUU-------------------------- ((((...(((((..(((.((((....))))...))).)--)(((((((((....).))))).)))..)))))))................-------------------------- ( -15.50, z-score = 0.75, R) >droWil1.scaffold_181089 3527597 104 - 12369635 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAGCACACUUCACUCUUUGCCAGUGACAGUUACAUGACAUUUUUUUUUUCUUGUUUUUUCGCUUUUUUG------------ ........((((((.((.((((....))))...))(((.........))).))))))((((.((..(((.((...........)).)))..)))))).......------------ ( -18.70, z-score = 0.24, R) >droVir3.scaffold_13047 17800490 80 - 19223366 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUCUGCCACUGACAGUUACACGACAUUUUUUUU---------------------------------- ((((..(((((((..((.((((....))))...))(((--.......)))..)))))))))))(((....))).........---------------------------------- ( -20.60, z-score = -2.08, R) >droMoj3.scaffold_6540 20288577 114 + 34148556 UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG--CACUUCACUCUUUGCCACUGACAGCUACACGACAUUUCUUUUUUUCUGUGUGAUUUUUUUUUUCCCCCUUUUUUUU ((((..((((((((.((.((((....))))...))(((--.......))).))))))))))))..((((((...............))))))........................ ( -24.16, z-score = -1.86, R) >droGri2.scaffold_15074 955109 99 + 7742996 UGUUUAAGUGGCAAUGCAAACGGCAACAUUUUGGCGAG--CACUUUUCUCUGUGCCACUGACAGUUACACGACAUUCGUUUUUUUUAUUUCCCUUUUUUUU--------------- ((((..(((((((.(((...((.(((....))).)).)--))..........))))))))))).....(((.....)))......................--------------- ( -17.30, z-score = -0.14, R) >consensus UGUUUAAGUGGCAAUGCAAAUGGCAACAUUUUGGCGAG__CACUUCACUCUUUGCCACUGACAGUAACAUGACAUCUUUCUUCCUUUUUUUUUUUUUUUUUU______________ ((((..((((((((.((.((((....))))...))(((.........))).))))))))))))..................................................... (-17.02 = -17.62 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:06 2011