| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,271,313 – 23,271,408 |
| Length | 95 |
| Max. P | 0.995136 |
| Location | 23,271,313 – 23,271,408 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 62.22 |
| Shannon entropy | 0.71341 |
| G+C content | 0.56756 |
| Mean single sequence MFE | -34.38 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.54 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.77 |
| SVM RNA-class probability | 0.995136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23271313 95 - 27905053 ---GGCAACGUUUGCAAUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC--AACACGUCCCAGUUCA--CCUC------CAUCCACGGAAGUCGUCCUGCAGUGAAAU ---(....)..(((((((((((((((....((((.(((.((((((....--....))))))..))).--))))------.....))))))).)))..)))))...... ( -35.00, z-score = -2.38, R) >droSim1.chr3R 23005484 95 - 27517382 ---GGCAACGUUUGCAAUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC--AACACGUCCCAGUUCG--CCUC------CGUCCACGGAAGUCGUCCUGCAGUGAAAU ---(....)..(((((((((((((((..(.((((((((.((((((....--....))))))..))))--))))------.)...))))))).)))..)))))...... ( -40.60, z-score = -3.52, R) >droSec1.super_13 2015249 95 - 2104621 ---GGCAACGUUUGCAAUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC--AACACGUCCCAGUUCG--CCUC------CGUCCACGGAAGUCGUCCUGCAGUGAAAU ---(....)..(((((((((((((((..(.((((((((.((((((....--....))))))..))))--))))------.)...))))))).)))..)))))...... ( -40.60, z-score = -3.52, R) >droYak2.chr3R 5610262 95 + 28832112 ---GGCAGCGUUUGCAAUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC--AACACGUCCCAGUUCG--CCUC------CAUCCACGGAAGUCGUCCUGCAGUGAAAU ---........(((((((((((((((....((((((((.((((((....--....))))))..))))--))))------.....))))))).)))..)))))...... ( -39.40, z-score = -3.18, R) >droEre2.scaffold_4820 5708630 101 + 10470090 ---GGCAACGUUUGCAGUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC--AACACGUCCCAGCUCG--CCUCCAUCGUCGUCCACGGAAGUCGUCCUGCAGUGAAAU ---(....)..((((((.((((((((....(((((((..((((((....--....))))))..).))--))))....(.....)))))))))....))))))...... ( -38.40, z-score = -2.00, R) >droAna3.scaffold_13340 4291022 98 + 23697760 ----------UUUGCAGCAUUUCCGCUGCACAAGCGGAAAGGAUAAACCAGAGCCCAUCCCAGACCGGACUCCGGAUCCCUUUUACGGAAACUAGCCUGCAGUGGACA ----------.(((((((.((((((((.....))))))))((((...((.(((.((..........)).))).)))))).......(....)..).))))))...... ( -29.60, z-score = -1.83, R) >dp4.chr2 8932287 85 - 30794189 GCUGACCGUUGCAGCAUCGUUUCCGUUGCACGGGCGGAUGCCCCAAC----AUCCAAUGGCAGUACG--AUCCAGUACGUUUCAAUAAAAC----------------- (((..((((.(((((.........)))))))))..(((((......)----))))...))).((((.--.....)))).............----------------- ( -25.70, z-score = -1.61, R) >droPer1.super_0 2745290 85 - 11822988 GCUGACCGUUGCAGCAUCGUUUCCGUUGCACGGGCGGAUGCCCCAAC----AUCCAAUGGCAGUACG--AUCCAGUACGUUUCAAUAAAAC----------------- (((..((((.(((((.........)))))))))..(((((......)----))))...))).((((.--.....)))).............----------------- ( -25.70, z-score = -1.61, R) >consensus ___GGCAACGUUUGCAAUGCUUCCGUUCCAGAGGCGGAAGGGAUGGCCC__AACACGUCCCAGUUCG__CCUC______CGUCCACGGAAGUCGUCCUGCAGUGAAAU ...........(((((....(((((((.....)))))))(((((............)))))....................................)))))...... (-12.46 = -13.54 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:05 2011