| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,266,965 – 23,267,029 |
| Length | 64 |
| Max. P | 0.795040 |
| Location | 23,266,965 – 23,267,029 |
|---|---|
| Length | 64 |
| Sequences | 10 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 74.15 |
| Shannon entropy | 0.59351 |
| G+C content | 0.38055 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -6.32 |
| Energy contribution | -6.90 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23266965 64 - 27905053 -GUUAUUGUGGUGCUCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGCUGACAGUUCAUAUUACG -......((((((...((((((((((((((....)))).)))).....))))))....)))))). ( -13.10, z-score = -1.41, R) >droSim1.chr3R 23001060 64 - 27517382 -GUUGUUGUGGUGCUCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGCUGACAGUUCAUAUUACG -......((((((...((((((((((((((....)))).)))).....))))))....)))))). ( -13.10, z-score = -1.04, R) >droSec1.super_13 2010860 64 - 2104621 -GUUGUUGUGGUGCUCCUGUCAAUGACUUUUCAUAAGGUUUAUUUUGCUGACAGUUCAUAUUACG -......((((((...((((((..((((((....))))))........))))))....)))))). ( -11.40, z-score = -0.56, R) >droYak2.chr3R 5605629 57 + 28832112 --------UGCUGCUCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGCUGACAGUUCAUAUUACG --------........((((((((((((((....)))).)))).....))))))........... ( -9.60, z-score = -0.82, R) >droEre2.scaffold_4820 5704231 64 + 10470090 -CUUGUUGUGGUGCUCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGCUGACAGUUCAUAUUACG -......((((((...((((((((((((((....)))).)))).....))))))....)))))). ( -13.10, z-score = -1.24, R) >droAna3.scaffold_13340 4286756 65 + 23697760 GUUGCUGCUGGGGCUCCUGUCAAUGACUUUUCAUAUGGUUCAUUUUGCUGACAGUUCAUAUUACG (((.(....).)))..((((((((((((........)).)))).....))))))........... ( -9.70, z-score = 0.84, R) >dp4.chr2 8927102 51 - 30794189 --------------UCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGUUGACAGCUCAUAUUACA --------------..((((((((((((((....))))))......))))))))........... ( -10.80, z-score = -2.30, R) >droVir3.scaffold_13047 17776834 65 - 19223366 GUUAUUGCCGUUGCCCUUGUCAAUGACUUUUCAUAAGGUUCAUUCUUUUGACAAUUCACAUAGCA (((((.((....))..((((((((((((((....)))).)))).....)))))).....))))). ( -9.60, z-score = -0.72, R) >droMoj3.scaffold_6540 20262101 50 + 34148556 -GUUAUUUAGGUCCUCUUAUGAAUGACUUUUCCCAUUGUUCAAUCGUGUGG-------------- -((((((((..........)))))))).....((((...........))))-------------- ( -5.90, z-score = 0.00, R) >droGri2.scaffold_15074 928150 64 + 7742996 -GUUGUGUUGCAAGUGUUGUCAAUGACUUUUCAUAAGGUUCAUUCUAUUGACACUUCACAUUGCG -........(((((((.(((((((((((((....))))))......)))))))...))).)))). ( -15.70, z-score = -1.77, R) >consensus _GUUGUUGUGGUGCUCCUGUCAAUGACUUUUCAUAAGGUUCAUUUUGCUGACAGUUCAUAUUACG ................((((((((((((((....)))).)))).....))))))........... ( -6.32 = -6.90 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:04 2011