| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,259,194 – 23,259,249 |
| Length | 55 |
| Max. P | 0.663579 |
| Location | 23,259,194 – 23,259,249 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 73.77 |
| Shannon entropy | 0.45912 |
| G+C content | 0.41610 |
| Mean single sequence MFE | -15.17 |
| Consensus MFE | -7.51 |
| Energy contribution | -7.47 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23259194 55 - 27905053 UACCAAUUGAAUUGGAAA-UGGGCAUUAACAUGGCCA----UCCAGUUACAUUGGCAUCG--------- ..(((((..(((((((..-(((.(((....))).)))----)))))))..))))).....--------- ( -17.70, z-score = -2.91, R) >droAna3.scaffold_13340 4277928 55 + 23697760 AACCAAUUGAAUUGGAAA-UACGUAUUAACAAGGCCA----UUCGAAUUCUGCAGCGUGG--------- ..(((...(((((.(((.-..(..........)....----))).))))).......)))--------- ( -5.50, z-score = 1.19, R) >droYak2.chr3R 5597142 51 + 28832112 UACCAAUUGAAUUGGAAA-UGGGUAUUAACAUGGCCA----UCCAGUUACAUUCGA------------- .......(((((((((..-(((.(((....))).)))----))))))).)).....------------- ( -10.90, z-score = -0.86, R) >droEre2.scaffold_4820 5696835 55 + 10470090 UACCAAUUGAAUUGGAAA-UGGGUAUUAACAUGGCCA----UCCAGUUACAUGGGCAGCG--------- ..(((....(((((((..-(((.(((....))).)))----)))))))...)))......--------- ( -14.10, z-score = -1.20, R) >droSec1.super_13 2003191 55 - 2104621 UACCAAUUGAAUUGGAAA-UGGGCAUUAACAUGGCCA----UCCAGUUACAUUGGCAUCG--------- ..(((((..(((((((..-(((.(((....))).)))----)))))))..))))).....--------- ( -17.70, z-score = -2.91, R) >droSim1.chr3R 22992973 55 - 27517382 UACCAAUUGAAUUGGAAA-UGGGCAUUAACAUGGCCA----UCCAGUUACAUUGGCAUCG--------- ..(((((..(((((((..-(((.(((....))).)))----)))))))..))))).....--------- ( -17.70, z-score = -2.91, R) >droVir3.scaffold_13047 17765867 69 - 19223366 AUCCAAUUGAAUUGGAAAGCAUGUUUAAACAUGCGCAAGGCUUUGACUGCACCAGCAGCAGCAGCAUUG .((((((...))))))..((((((....)))))).(((.((((((.((((....))))))).))).))) ( -22.60, z-score = -2.25, R) >consensus UACCAAUUGAAUUGGAAA_UGGGUAUUAACAUGGCCA____UCCAGUUACAUUGGCAUCG_________ .........(((((((...(((.(((....))).)))....)))))))..................... ( -7.51 = -7.47 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:04 2011