| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,805,733 – 8,805,845 |
| Length | 112 |
| Max. P | 0.974540 |
| Location | 8,805,733 – 8,805,845 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 93.59 |
| Shannon entropy | 0.12317 |
| G+C content | 0.51242 |
| Mean single sequence MFE | -39.17 |
| Consensus MFE | -33.50 |
| Energy contribution | -34.33 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8805733 112 - 23011544 GGCUUGUGUUCCAGCUCCGGCUUCAGGUUCCUGCCCAGAUUGAGCUUGUGUAGUUAACGCGUCGAGCUUACUUUUAUGCUGGGCUGGAACCCGAUGUCAAUCAAAAAUUCCC- ((((((.((((((((.(((((..(((....))).......(((((((((((.......))).)))))))).......))))))))))))).))).)))..............- ( -40.70, z-score = -3.40, R) >droSim1.chr2L 8583885 112 - 22036055 GGCUUGUGUUCCAGCUCCGGCUUCAGGUUCCUGCCCAGAUUGAGCUUGUGUAGUUAACGCGUCGAGCUUACUUUUAUGCUGGGCUGGAGCCCGAUGUCAAUCAAAAAUUCCC- ((((((.((((((((.(((((..(((....))).......(((((((((((.......))).)))))))).......))))))))))))).))).)))..............- ( -40.70, z-score = -2.96, R) >droSec1.super_3 4277743 112 - 7220098 GGCUUGUGUUCCAGCUCCGGCUUCAGGUUCCUGCCCAGAUUGAGCUUGUGUAGUUAACGCGUCGAGCUUACUUUUAUGCUGGGCUGGAGCCCGAUGUCAAUCAAAAAUUCCC- ((((((.((((((((.(((((..(((....))).......(((((((((((.......))).)))))))).......))))))))))))).))).)))..............- ( -40.70, z-score = -2.96, R) >droYak2.chr2L 11450440 113 - 22324452 GGCUUGUGUUCCAGCUGCGGCUUCAGGUUCCUGCCCAGAUUGAGAUGGUGUGGUUAACGCGUCGAGCUUACCUUCAUGCUGGGCUGGAACCCGAUGUCAAUCAAAAAUUCCCC ((((.(....).))))..(((.((.((((((.((((((..((((..((((.(.(..(....)..).).))))))))..)))))).)))))).)).)))............... ( -38.50, z-score = -1.39, R) >droEre2.scaffold_4929 9397302 112 - 26641161 GGCUUGUGUUCCAGCUCCGGCUUCAGGUUCCUGCCCAGAUUGAGCUUGUGUAGUUAACGCGUCGAGCUUACUUUUAUGCUGGGCUGGAACCCGAUGUCAAUCAAAAAUUCCC- ((((((.((((((((.(((((..(((....))).......(((((((((((.......))).)))))))).......))))))))))))).))).)))..............- ( -40.70, z-score = -3.40, R) >droAna3.scaffold_12916 10468680 106 - 16180835 GGCUUGUGUUCCAGCUCCGGCUUGGGGUU------GAGAUUGAGCUUGUGUAGUUAACGCGUUGAGCUUGCUUUUAUGCUGAGCUGGAAACCGAUGUCAAUCAAAAAUUCCC- ((((((..(((((((((.(((..(((((.------......((((((((((.....))))...)))))))))))...))))))))))))..))).)))..............- ( -33.71, z-score = -1.74, R) >consensus GGCUUGUGUUCCAGCUCCGGCUUCAGGUUCCUGCCCAGAUUGAGCUUGUGUAGUUAACGCGUCGAGCUUACUUUUAUGCUGGGCUGGAACCCGAUGUCAAUCAAAAAUUCCC_ ((((((.((((((((.(((((..(((....))).......(((((((((((.......))).)))))))).......))))))))))))).))).)))............... (-33.50 = -34.33 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:59 2011