| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,254,555 – 23,254,645 |
| Length | 90 |
| Max. P | 0.786277 |
| Location | 23,254,555 – 23,254,645 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 72.58 |
| Shannon entropy | 0.51087 |
| G+C content | 0.42479 |
| Mean single sequence MFE | -26.74 |
| Consensus MFE | -9.87 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.786277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23254555 90 - 27905053 AGAUACAUAUGUAUCCGAAUCGUGUGGAUUUGGGACUACUGGUAGUCU----GUUGUAGCCUGUUUAGCACGUUGCCA--------GAGUCGUGUGUUUUAU ((((((((......(((((((.....)))))))((((.(((((((..(----((((.........)))))..))))))--------)))))))))))))... ( -31.80, z-score = -3.61, R) >droSim1.chr3R 22987849 94 - 27517382 AGAUACAUAUGUAUCCGAAUCGUGUGGAUUUGGGACUACUGGUAGACUGUAGUCUGUAGCCUGUUUAGCACGUUGCCA--------GAGUCGUGUGUUUUAU ((((((((......(((((((.....)))))))((((.(((((((((....))))..(((.((.....)).)))))))--------)))))))))))))... ( -30.40, z-score = -2.43, R) >droSec1.super_13 1998036 94 - 2104621 AGAUACAUAUGUAUCCGAAUCGUGUGGAUUUGGGACUACUGGUAGACUGUAGUCUGUAGCCUGUUUAGCACGUUGCCA--------GAGUCGUGUGUUUUAU ((((((((......(((((((.....)))))))((((.(((((((((....))))..(((.((.....)).)))))))--------)))))))))))))... ( -30.40, z-score = -2.43, R) >droYak2.chr3R 5591783 94 + 28832112 AGAUACAUAUGUAUCUGAAUCGUGUGGAUUUGGGACUACCGGUAGUCUGUAGCCUGUGGUCUGUUUAGCACGUUGCCA--------GAGUCGUGUGUUUUAU .((.(((((((..((((...(((((.......(((((((.(((........))).))))))).....)))))....))--------))..))))))).)).. ( -30.20, z-score = -2.31, R) >droEre2.scaffold_4820 5691939 81 + 10470090 AGAUACAAAUGUAUCCGAAUCGUGUGGAUUUUGGA--AC------UU-----CUGGUAGUCUGUUUAGCACGUUGCCA--------GAGUCGUGUGUUUUAU (((((((......((((((((.....)).))))))--..------((-----(((((((..((.....))..))))))--------)))...)))))))... ( -22.20, z-score = -2.14, R) >droAna3.scaffold_13340 4273117 95 + 23697760 AGAUACAUAUGUAUCCGCAUCGUGUGGAUUUGGGA--GCCCGUCGUC-----CCUGUAGUUUGUUUAGCACGUUGCCACGCUGCCGUAGUCAUGUGUUUUAU .((.(((((((...(.(((.((((.((((.(((..--..)))..)))-----)..((((..((.....))..)))))))).))).)....))))))).)).. ( -25.20, z-score = -0.67, R) >droWil1.scaffold_181089 3492870 85 - 12369635 AAAUGCAUUUGUUUAAUAAACUUGAAAUAUUUGCUUUACUGG----------UGUAUGGUAUACCUAAGUCGGCGAGAC-------GACUUACUUACUUCAU ....(((..(((((..........)))))..)))......((----------((((...))))))(((((((......)-------)))))).......... ( -17.00, z-score = -1.68, R) >consensus AGAUACAUAUGUAUCCGAAUCGUGUGGAUUUGGGACUACUGGUAGUCU____CCUGUAGUCUGUUUAGCACGUUGCCA________GAGUCGUGUGUUUUAU ....(((((((..((((((((.....)))))))).....................(((((.((.....)).)))))..............)))))))..... ( -9.87 = -10.34 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:03 2011