| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,249,393 – 23,249,448 |
| Length | 55 |
| Max. P | 0.935848 |
| Location | 23,249,393 – 23,249,448 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 91.52 |
| Shannon entropy | 0.11687 |
| G+C content | 0.54545 |
| Mean single sequence MFE | -18.65 |
| Consensus MFE | -18.20 |
| Energy contribution | -17.87 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23249393 55 + 27905053 AAUGGCAACGGUAUGGGACGGACACAAGGCUCUACUCGUCCCUGGACGACUGUCA ..(((((.((....(((((((..............)))))))....))..))))) ( -15.64, z-score = -0.53, R) >droSim1.chr3R 22982752 55 + 27517382 AAUGGCAAAGGUAUGGGCUGGAUACAAAGCUCUACCCGUCCCUGGACGACUGUCA ..(((((..((((.(((((........)))))))))((((....))))..))))) ( -20.50, z-score = -2.47, R) >droSec1.super_13 1993010 55 + 2104621 AAUGGCAAAGGUAUGGGCUGGAUACAGAGCUCUACCCGUCCCUGGACGACUGUCA ..(((((..((((.(((((........)))))))))((((....))))..))))) ( -19.80, z-score = -1.75, R) >consensus AAUGGCAAAGGUAUGGGCUGGAUACAAAGCUCUACCCGUCCCUGGACGACUGUCA ..(((((..((((.(((((........)))))))))((((....))))..))))) (-18.20 = -17.87 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:48:02 2011