| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,240,354 – 23,240,461 |
| Length | 107 |
| Max. P | 0.540633 |
| Location | 23,240,354 – 23,240,461 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 69.90 |
| Shannon entropy | 0.58250 |
| G+C content | 0.44224 |
| Mean single sequence MFE | -25.11 |
| Consensus MFE | -11.83 |
| Energy contribution | -14.05 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23240354 107 - 27905053 UGGCACUCAUUCAAUGGCC-GAGUCACCAAAGUGCAGC--CCAGCCGAUCGAUAUGUUGACAUAAUAUCGAAC--AGAACUUGGUCUUAGAACUACUAUUGAGUGGUAAACU ((.(((((((((...((((-(((((......(.((...--...)))(.(((((((.........))))))).)--.).))))))))...))).......)))))).)).... ( -27.31, z-score = -1.32, R) >droEre2.scaffold_4820 5678566 100 + 10470090 UGGAAUUCAUACAAUG--C-GGGUCACAAAAGUGCAGC------CCGAUCGAUAUGUUGACAUAAUAUCGAGC---AAACUUGGUCUUGGAAGCACCAUUGAGUGGUAAACU .........(((..((--(-(((((((....)))..))------))..(((((((.........)))))))))---).(((..((..((....))..))..))).))).... ( -24.90, z-score = -0.83, R) >droYak2.chr3R 5576122 95 + 28832112 CGGCAUUCAUUCAAUGGCC-GAGUCACAAAAGUGCAGC--CCAACCGAUCGAUAUGUUGACAUAAUAUCGAGC---AAA-----------AGUUACCAUUGAGUGGUAAACU ......(((((((((((..-..(.(((....))))...--......(.(((((((.........))))))).)---...-----------.....)))))))))))...... ( -22.40, z-score = -1.45, R) >droSec1.super_13 1984043 108 - 2104621 UGGCACUCAUUCAAUGGCC-GAGUCACAAAAGUGCAGC-CCCAGCCGAUCGAUAUGUUGACCUAAUAUCGAGC--AGAACUUGGUCUUAGAACUACUAUUGAGUGGUAAACA ((.(((((((((...((((-(((((((....)))....-....((...(((((((.........)))))))))--...))))))))...))).......)))))).)).... ( -27.21, z-score = -0.91, R) >droSim1.chr3R 22973795 111 - 27517382 UGGCACUCAUUCAAUGGCC-GAGUCACAAAAGUGCAGCCCCCAGCCGAUCGAUAUGUUGACAUAAUAUCGAGCAGAAAACUUGGUCUUAGAACUACUAUUGAGUGGUAAACU ((.(((((((((...((((-(((((((....))).........((((((...((((....))))..)))).)).....))))))))...))).......)))))).)).... ( -27.71, z-score = -1.22, R) >droAna3.scaffold_13340 4259844 94 + 23697760 CGAGAACCCUGCAAUACUUAAAGUAACUUAAGGGCCCAACUCCAUCGAUCGAUAAGCGGA-AUCCUGUUGAGUAGGGCUUCCAGUUAAAGAACCA----------------- .......................(((((...((((((.((((.(((....))).(((((.-...))))))))).))))))..)))))........----------------- ( -21.10, z-score = -0.52, R) >consensus UGGCACUCAUUCAAUGGCC_GAGUCACAAAAGUGCAGC__CCAGCCGAUCGAUAUGUUGACAUAAUAUCGAGC__AAAACUUGGUCUUAGAACUACUAUUGAGUGGUAAACU ......(((((((((((.....(.(((....)))).............(((((((.........)))))))........................)))))))))))...... (-11.83 = -14.05 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:59 2011