| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,239,699 – 23,239,791 |
| Length | 92 |
| Max. P | 0.512382 |
| Location | 23,239,699 – 23,239,791 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 79.42 |
| Shannon entropy | 0.44220 |
| G+C content | 0.46107 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -8.26 |
| Energy contribution | -9.69 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23239699 92 + 27905053 -GAUUCGUU-UUCC-CGACCAGAAAUGAAACAUCUGCAGGAG-UGCACGCCCCGACGCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU -..((((((-((..-......))))))))......(((((((-..(((........((((((....)))))).....)))....)))))))..... ( -26.22, z-score = -2.57, R) >droPer1.super_0 2710348 95 + 11822988 GAUACCCAUACCCUCAAGCCAGAAAUGAAACAGCUGCAUGAG-UGCACGCCCCAAUGCCCAUGAAAAUGGAGCAAAAGUGAUUUCUUCUGUUUAAU ...................(((((..((((((((((((....-)))).)).....(((((((....)))).)))....)).)))))))))...... ( -20.40, z-score = -1.96, R) >dp4.chr2 8897602 95 + 30794189 GAUACCCAUACCCUCAAACCAGAAAUGAAACAGCUGCAUGAG-UGCACGCCCCAAUGCCCAUGAAAAUGGAGCAAAAGUGAUUUCUUCUGUUUAAU ...................(((((..((((((((((((....-)))).)).....(((((((....)))).)))....)).)))))))))...... ( -20.40, z-score = -2.46, R) >droSim1.chr3R 22973125 92 + 27517382 -GAUUCGUU-UUCC-CGACCAGAAAUGAAACAUCUGCAGGAG-UGCACGCCCCGACCCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU -..((((((-((..-......))))))))......(((((((-..(((.........(((((....)))))......)))....)))))))..... ( -22.66, z-score = -1.83, R) >droSec1.super_13 1983372 92 + 2104621 -GAUUCGUU-UUCC-CGACCAGAAAUGAAACAUCUGCAGGAG-UGCACGCCCCGACGCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU -..((((((-((..-......))))))))......(((((((-..(((........((((((....)))))).....)))....)))))))..... ( -26.22, z-score = -2.57, R) >droYak2.chr3R 5575493 93 - 28832112 -GAUUCGUU-UUCCACGACCAGAAAUGAAACAUCUGCAGGAG-UGCACGCCCCGACGCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU -..((((((-((.........))))))))......(((((((-..(((........((((((....)))))).....)))....)))))))..... ( -25.42, z-score = -2.17, R) >droEre2.scaffold_4820 5677936 92 - 10470090 -GAUUCGUU-UUCC-CAACCAGAAAUGAAACAUCUGCAGGAG-UGCACGCCCCGACGCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU -..((((((-((..-......))))))))......(((((((-..(((........((((((....)))))).....)))....)))))))..... ( -26.22, z-score = -2.78, R) >droGri2.scaffold_15074 894462 88 - 7742996 -------UCGUUCACUACCCAGAAAUAAGACAGCUGCACAAG-UGCACGCCCCAACGCCCAAUAAAGUGGGCUAAAACGAAUUUUCCCGUUUCGAG -------..............(((((..((..((((((....-)))).))......(((((......)))))............))..)))))... ( -18.30, z-score = -1.56, R) >droWil1.scaffold_181089 3474262 83 + 12369635 ---------GACUCCA--CGAGAAAUGGAACAGAUGCAUGAG-UGCACGCCGCGAUGCCCAUGAAAAUGGAGCAAA-GCGAUUUUUCCUGUUUAAU ---------..(((..--.))).....((((((.((((....-))))...(((..(((((((....)))).)))..-))).......))))))... ( -24.30, z-score = -2.73, R) >droAna3.scaffold_13340 4259153 94 - 23697760 --UCUCACUGUUUCCCAACCAGAAAUGAAACAGCUGCAGAAGCUGCAUGCCCCGAUGCCCCUGAAAAUGGGGCAAAAGUGAUUUCUUCUGUUUAAU --.....(((((((............)))))))..(((((((...(((.......((((((.......))))))...)))....)))))))..... ( -26.10, z-score = -2.28, R) >consensus _GAUUCGUU_UUCCCCAACCAGAAAUGAAACAGCUGCAGGAG_UGCACGCCCCGACGCCCAUGAAAAUGGGCCAAAAGUGAUUUCUUCUGUUUAAU ....................((((((.(......((((.....))))...........((((....))))........).)))))).......... ( -8.26 = -9.69 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:59 2011