| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,218,513 – 23,218,582 |
| Length | 69 |
| Max. P | 0.683303 |
| Location | 23,218,513 – 23,218,582 |
|---|---|
| Length | 69 |
| Sequences | 13 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 77.32 |
| Shannon entropy | 0.48280 |
| G+C content | 0.50775 |
| Mean single sequence MFE | -19.19 |
| Consensus MFE | -11.01 |
| Energy contribution | -10.84 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23218513 69 - 27905053 --------UUCUUCACAUUUCAGGGCAUGCGAAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAAUUGGAG --------..(((((....(((((((((.......(((.((....)).))).....)))).)))))......))))) ( -18.10, z-score = -1.46, R) >droSim1.chr3R 22952000 69 - 27517382 --------UUCUUCACAUUUCAGGGCAUGCGAAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAAUUGGAG --------..(((((....(((((((((.......(((.((....)).))).....)))).)))))......))))) ( -18.10, z-score = -1.46, R) >droSec1.super_13 1962144 69 - 2104621 --------UUCUUCACAUUUCAGGGCAUGCGAAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAAUUGGAG --------..(((((....(((((((((.......(((.((....)).))).....)))).)))))......))))) ( -18.10, z-score = -1.46, R) >droYak2.chr3R 5553041 69 + 28832112 --------UUCUUCACAUUUCAGGGCAUGCGAAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAAUUGGAG --------..(((((....(((((((((.......(((.((....)).))).....)))).)))))......))))) ( -18.10, z-score = -1.46, R) >droEre2.scaffold_4820 5651525 69 + 10470090 --------UUCCUCACAUUUCAGGGCAUGCGAAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAAUUGGAG --------.(((.......(((((((((.......(((.((....)).))).....)))).))))).......))). ( -19.24, z-score = -1.48, R) >droAna3.scaffold_13340 4237598 64 + 23697760 -------------UUCUUUUCAGGGCAUGCGUAUGUCGGGCGAGGGCUCGGAAAUAAUGCAUUUGACGCAGCUGGAG -------------.....(((((.((((((((...((((((....)))))).....)))))).....))..))))). ( -18.30, z-score = -0.90, R) >dp4.chr2 8876605 72 - 30794189 -----GUUCAUAUCUCUUUUCAGGGCAUGCGUAUGUCGGGCGAGAGCACGGACAUAAUGCACUUGACGCAGCUGGAG -----........((((..(((((((((...((((((.(((....)).).)))))))))).))))).......)))) ( -22.20, z-score = -1.43, R) >droPer1.super_0 2689413 72 - 11822988 -----GUUCAUAUCUCUUUUCAGGGCAUGCGUAUGUCGGGCGAGAGCACGGACAUAAUGCACUUGACGCAGCUGGAG -----........((((..(((((((((...((((((.(((....)).).)))))))))).))))).......)))) ( -22.20, z-score = -1.43, R) >droWil1.scaffold_181089 3452746 69 - 12369635 ------UGUAUC-UAUUUU-UAGGGUAUGCGUAUGUCUGGCGAGAGCACGGAAAUAAUGCACCUGACACAACUGGAA ------....((-((.(((-((((...(((((...((((((....)).))))....))))))))))...)).)))). ( -17.80, z-score = -1.46, R) >droVir3.scaffold_13047 17723732 60 - 19223366 -----------------UUGCAGGGCAUGCGUAUGUCAGGAGAGAGCACGGAAAUCCUGCACCUGACGCAGCUGGAG -----------------......(((.(((....((((((.....(((.((....))))).)))))))))))).... ( -18.00, z-score = -0.37, R) >droMoj3.scaffold_6540 20203373 68 + 34148556 ---------UUCUUCUGUUGCAGGGCAUGCGUAUGUCUGGCGAGAGCACGGAAAUCAUGCACCUGACGCACCUGGAG ---------.(((..(((..(((((((((......((((((....)).))))...))))).))))..)))...))). ( -24.50, z-score = -1.58, R) >droGri2.scaffold_15074 870900 77 + 7742996 UUGUAUUGUAUUAUGUUUUGCAGGGCAUGCGUAUGUCUGGCGAGAGCACGGAAAUCAUGCACCUGACACAACUGGAG ..............(((.(((((((((((......((((((....)).))))...))))).)))).)).)))..... ( -23.90, z-score = -1.70, R) >anoGam1.chr2R 7861541 57 - 62725911 --------------------CAGAACAUGAGGAUGUCCGGAGAAAAUGGGGAAACCUUGUACUUGACACAGCUGGAG --------------------...............(((((.......(((....)))(((.....)))...))))). ( -10.90, z-score = -0.20, R) >consensus ________UUCUUCACAUUUCAGGGCAUGCGUAUGUCGGGCGAGAGCACGGAAAUAAUGCACUUGACGCAACUGGAG ....................((((((((.......((.(((....)).).))....)))).))))............ (-11.01 = -10.84 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:56 2011