| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,198,823 – 23,198,917 |
| Length | 94 |
| Max. P | 0.596369 |
| Location | 23,198,823 – 23,198,917 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.70 |
| Shannon entropy | 0.47929 |
| G+C content | 0.51075 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -11.80 |
| Energy contribution | -10.28 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23198823 94 + 27905053 ---CAUCCGACUGCUAAUUGAAUUCCAAACUGGCCCAUGCAGUCGCCUCCAUUUUCCGUUGGCCAGACUGACAGCCAAAAAGCAGAGAUGACCACUG------ ---((((...(((((..(((.....)))..((((...((((((((((..(.......)..)))..))))).))))))...))))).)))).......------ ( -24.50, z-score = -2.16, R) >droSim1.chr3R_random 1109031 100 + 1307089 ---CAUCCGAUUGCUAAUUGAAUUCCAAACUGGAGCAUGCAGUCGCCUCCAUUUUCCAUUGGCCAGACUGACAGCCAAAAAGCAGAGAUGACCAGUGGAAGUG ---....(((((((....((...(((.....))).)).))))))).......((((((((((.((..(((.(.........))))...)).)))))))))).. ( -27.80, z-score = -1.75, R) >droSec1.super_13 1942522 100 + 2104621 ---CAUCCGAUUGCUAAUUGAAUUCCAAACCGGACCAUGCAGUCGCCUCCAUUUUCCAUUGGUCAGACUGAGAGACAAAAAGCAGAGAUGACCAGUGGAAGUG ---....(((((((....((...(((.....))).)).))))))).......(((((((((((((..(((............)))...))))))))))))).. ( -31.30, z-score = -3.45, R) >droYak2.chr3R 5531888 93 - 28832112 ---CAUC-GACUGCUAAUUGAAUUCCAAACGGGCACAUGCACUGGUCUCCAUUUUCCAUUGGCCAGUCGGACAGCCACAAUGUAGAGAUGACCACUG------ ---((((-((((((((((.(((.......(((((....)).))).........))).))))).)))))((....))..........)))).......------ ( -22.39, z-score = -0.44, R) >droEre2.scaffold_4820 5632174 94 - 10470090 ---CAUCCGACUGCUAAUUGAAUUCCAAACGGGCCCGUGCAGUUGCCUCCAGUUUCCGUUGGCCAGGCUGACUGCCAAAAAGUAGAGAUGACCACUG------ ---((((...(((((..(((........(((....)))((((((((((((((......))))..)))).)))))))))..))))).)))).......------ ( -27.10, z-score = -1.41, R) >droAna3.scaffold_13340 4198454 97 - 23697760 CCUGGGUCUGCUGCUAAUUGAAUUCCAAACUGGCCUUUAUGGCGGCCAAGUGGCAUCGUCGGCCAAAUGGCCGAUAGCUAGGCCGAGGUGGUCGCUG------ (((.((((((((((((.(((.....)))..(((((........)))))..))))...(((((((....)))))))))).))))).))).........------ ( -40.80, z-score = -2.11, R) >consensus ___CAUCCGACUGCUAAUUGAAUUCCAAACUGGCCCAUGCAGUCGCCUCCAUUUUCCAUUGGCCAGACUGACAGCCAAAAAGCAGAGAUGACCACUG______ .......(((((((....((....((.....))..)).)))))))...........((.(((.((..(((............)))...)).))).))...... (-11.80 = -10.28 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:52 2011